Global Protein–Protein Interaction Network of Rice Sheath Blight Pathogen

Abstract

<i>Rhizoctonia solani</i> is the major pathogenic fungi of rice sheath blight. It is responsible for the most serious disease of rice (<i>Oryza sativa</i> L.) and causes significant yield losses in rice-growing countries. Identifying the protein–protein interaction (PPI) maps of <i>R. solani</i> can provide insights into the potential pathogenic mechanisms and assign putative functions to unknown genes. Here, we exploited a PPI map of <i>R. solani</i> anastomosis group 1 IA (AG-1 IA) based on the interolog and domain–domain interaction methods. We constructed a core subset of high-confidence protein networks consisting of 6705 interactions among 1773 proteins. The high quality of the network was revealed by comprehensive methods, including yeast two-hybrid experiments. Pathogenic interaction subnetwork, secreted proteins subnetwork, and mitogen-activated protein kinase (MAPK) cascade subnetwork and their interacting partners were constructed and analyzed. Moreover, to exactly predict the pathogenic factors, the expression levels of the interaction proteins were investigated by analyzing RNA sequences that consisted of samples from the entire infection progress. The PPIs offer an exceptionally rich source of data that can be used to understand the gene functions and biological processes of this serious disease at the system level