This compressed folder contains the simulated data sets where Rhagoletis pomonella GBS data were used as the starting point. It contains two gemma formatted genotype files (geno_sims.txt and geno592r_sims.txt) that contain the underlying genotypic data for the base simulations and those with replicated genotypes, respectively. The remaining files are named based on the simulations condition (simsN): 1, h2=0.3, L = 100; 2, h2=0.3, L=10; 3, h2=0.05, L=100; 4, h2=0.05, L=10; 5, h2=0.3, L=1000; and 6, h2=0.05, L=1000. The general file types are as follows: pheno* = gemma formatted phenotype file with one column per simulated phenotypic data set, bv* = breeding values (expected phenotypic values) for each individual based on the genotypic data, effect* = phenotypic effect sizes for causal variants, functvar* = a list of the causal variants (by SNP number, and in the same order as in effect*)
