Power (PO) and false positives rate (FPR) with 25 QTL and 35 % missing rate, for major and minor QTL to evaluate the GWAS performance based on simulated matrix with a Bonferroni threshold corrected by the effective number of independent markers. Each parameter was calculated for the combinations of: heritabilties (h 2 ), marker score matrices to simulate the QTL (i.e. Ysim-NImp , Ysim-MVN-EM, Ysim-Mean and Ysim-RF ), and marker score matrices to perform the GWAS analysis (i.e. G NImp, G MVN-EM, G Mean and G RF ). (PDF 156 KB
