Additional file 1: Table S1. of Gut metagenomes of type 2 diabetic patients have characteristic single-nucleotide polymorphism distribution in Bacteroides coprocola

Abstract

The taxonomic lineages of the 356 bacterial species and accessions of their reference genome assemblies. Table S2. Species with significantly different abundance profiles between the T2D and HC groups. Table S3. Detailed descriptive information for 20 bacterial species with sufficiently supporting NGS reads in a sufficient number of samples. Table S4. Summary of the 1300 genes found to have significantly different SNP densities between the T2D and HC groups. The top 65 genes with the most differentiated SNP distributions between the groups are highlighted in light green. Table S5. Intra-tree distances and enrichment analysis based on phylogenetic trees, hierarchical clustering trees, and affinity propagation clustering for the selected 65 genes. Table S6. SNP densities, intra-tree distances, and numbers of the most biased genes under different mutated allele frequency (MuAF) thresholds (>0.2, >0.5, and >0.8). (XLS 766 kb