MOESM5 of Evaluation of the accuracy of imputed sequence variant genotypes and their utility for causal variant detection in cattle

Abstract

Additional file 5: Table S1. Significantly associated variants at five fat percentage QTL. Variants located on chromosomes 5, 6, 11, 16 and 19 with P values less than 2.1 × 10−9. The positions of the variants correspond to the UMD3.1 assembly of the bovine genome. The substitution effects (beta, standard error of beta) are given for the alternative allele. The R2 value is the estimated accuracy of imputation from Minimac