Gene expression of L. bicolor TF-encoding genes that are significantly regulated during ECM development with Pseudotsuga menziesii at 2, 4 and/or 6Â weeks. Data used to generate Fig. 3. (XLSX 18Â kb

A. Brun (4443805)

A. Kohler (1444819)

B. Montanini (4443793)

C. Veneault-Fourrey (4443784)

E. Levati (4443808)

E. Morin (4443796)

E. Tisserant (4443802)

F. Martin (4443787)

J. Ruytinx (4443781)

S. Ottonello (4443790)

Y. Daguerre (4443799)

List and expression level of TF-encoding genes significantly up or downregulated in various mutualistic interaction (expression ratio > 2.5 folds and FDR or BH modified t-test < 0.05): A. A. muscaria- Populus tremula x tremuloides. B . C. geophilum- Pinus sylvestris C. H. cylindrosporum- Pinus pinaster D. P. involutus- Betula pendula E. P. croceum-Quercus robur F. S. luteus- Pinus G. T. melanospsorum- C. avellana H. S. vermifera- Arabidopsis thaliana I. T. calospora- Serapias vomeracea J. O. maius- Vaccinium myrtillus. (XLSX 66 kb

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Additional file 5: Table S5. of Regulatory networks underlying mycorrhizal development delineated by genome-wide expression profiling and functional analysis of the transcription factor repertoire of the plant symbiotic fungus Laccaria bicolor

List of L. bicolor “core” TF orthologues genes in ECM fungi (A. muscaria; H. cylindrosporum; P. involutus, P. croceum, S. luteus, C. geophilum and T. melanospsorum). The shaded rows indicate orthologues (using Reciprocal Blast Hit) of L. bicolor TFs, which are up or downregulated in symbiotic tissues. (XLSX 25 kb

Additional file 6: Table S6. of Regulatory networks underlying mycorrhizal development delineated by genome-wide expression profiling and functional analysis of the transcription factor repertoire of the plant symbiotic fungus Laccaria bicolor

Number of proteins within each TF family for 70 fungal genomes. Data used to generate Fig. 1. (XLSX 32Â kb

Additional file 2: Table S2. of Regulatory networks underlying mycorrhizal development delineated by genome-wide expression profiling and functional analysis of the transcription factor repertoire of the plant symbiotic fungus Laccaria bicolor

List of P. trichocarpa TFs, unconventional activators and putative unconventional activators retrieved from, and functionally validated by, the TAT screen of ECM and Roots libraries. For each gene, additional information (e.g. number of clones retrieved, name and other characteristics of the most informative best hit obtained from a BLASTX search carried out in GenBank, IPR domain if any) is reported. (XLSX 27Â kb

Additional file 7: Table S7. of Regulatory networks underlying mycorrhizal development delineated by genome-wide expression profiling and functional analysis of the transcription factor repertoire of the plant symbiotic fungus Laccaria bicolor