Sequencing and variant call quality metrics. A. Percentage of contamination and chimeric reads. B. Various metrics based on variant calling. Figure S2. Distribution of genic and intergenic variants. Figure S3. Combined PCA between 1000 Genomes and HMP300. Figure S4. Correlation between high-level genetic features and microbial species in non-gut body sites. Figure S5. Correlation between high-level genetic features and microbial metabolic pathways in non-gut body sites. Figure S6. Quantile-quantile plots for association analysis between microbial species and GWAS Catalog SNVs. Figure S7. Quantile-quantile plots for association analysis between microbial metabolic pathways and GWAS Catalog SNVs. Figure S8. Putative SNV-microbial species associations. Figure S9. Putative SNV-microbial metabolic pathway associations. Table S1. Raw statistics for genetic principal component analysis. Table S2. Top SNV and microbiome association results. (PDF 1953 kb
