Changes
Fixed some wording in the options and output logs
Changed defaults for trimming (now stricter)
Changed defaults for stitching (now allows as little as 10 bases of overlap)
Added '-outies' shorthand (use as -outies f for instance)
Increased aggressiveness of trimming in palindrome (paired end) mode when safe
Now has a DOI for citation purposes
Installation instructions:
Extract to a directory in your executable PATH (or anywhere, and add that directory to PATH).
Use by calling shi7.py anywhere
