The organic food market is developing dynamically in many European countries and therefore studies concerning the nutritive value of organically produced foods are becoming increasingly important. It was found appropriate to conduct studies on selected bioactive substances and antioxidant properties of apple preserves prepared from organic vs. conventional apples. Three apple cultivars, Lobo, Boskoop and Cortland, were grown in organic and conventional orchards in the Mazovia region in Poland. Dry matter, total phenols, vitamin C, total flavones and antioxidant activity were determined in fresh and pasteurized apple purée. The apple purée prepared from the organic apples contained significantly more total phenols, vitamin C, total flavones and showed a higher antioxidant capacity than the preserves prepared from conventional apples. Processing had a negative effect on both antioxidant capacity and bioactive substances. After pasteurization, the content of vitamin C, total phenols and flavones and antioxidant properties have decreased in the apple purée from both agricultural systems (organic and conventional)