Segmenting tree structures is common in several image processing
applications. In medical image analysis, reliable segmentations of airways,
vessels, neurons and other tree structures can enable important clinical
applications. We present a framework for tracking tree structures comprising of
elongated branches using probabilistic state-space models and Bayesian
smoothing. Unlike most existing methods that proceed with sequential tracking
of branches, we present an exploratory method, that is less sensitive to local
anomalies in the data due to acquisition noise and/or interfering structures.
The evolution of individual branches is modelled using a process model and the
observed data is incorporated into the update step of the Bayesian smoother
using a measurement model that is based on a multi-scale blob detector.
Bayesian smoothing is performed using the RTS (Rauch-Tung-Striebel) smoother,
which provides Gaussian density estimates of branch states at each tracking
step. We select likely branch seed points automatically based on the response
of the blob detection and track from all such seed points using the RTS
smoother. We use covariance of the marginal posterior density estimated for
each branch to discriminate false positive and true positive branches. The
method is evaluated on 3D chest CT scans to track airways. We show that the
presented method results in additional branches compared to a baseline method
based on region growing on probability images.Comment: 10 pages. Pre-print of the paper accepted at Workshop on Graphs in
Biomedical Image Analysis. MICCAI 2017. Quebec Cit
