The EU Biodiversity Strategy to 2020 called on EU member states to map and assess the state of ecosystems and their services in their national territory (European Commission 2011). This knowledge-base should be designed to be a primary resource for developing Europe’s green infrastructure, to identify areas for ecosystem restoration and to set a baseline against which the goal of ‘no net loss” of biodiversity and ecosystem services can be evaluated. Thus, appropriate methods, information and data are needed to know where and how, for example, food, water, clean air, other materials and recreation are provided, and how climate, nutrients, natural disasters, pests and diseases are regulated. Information and data on actual ecosystem services (ES) demands, beneficiaries and potential mismatches with their supply location as well as ES quality and quantity are essential to make informed decisions for appropriate management of natural resources. ES are a very complex topic and their integrative assessment and implementation asks for truly transdisciplinary approachesThe ESMERALDA project received funding from the European Union’s Horizon 2020 research and innovation programme: grant agreement No 64200