Fluorophores are indispensable for imaging biological processes. We report the design and synthesis of azide-tagged boronic acid salicylidenehydrazone (BASHY) dyes and their use for site-selective labelling of Annexin V. The Annexin V-BASHY conjugate maintained function and fluorescence as demonstrated by the targeted detection of apoptotic cells.We thank FCT Portugal (Doctoral Fellowship, SFRH/BD/94779/2013 to F. M. F. S., Postdoctoral Fellowship, SFRH/BPD/103172/2014 to P. M. S. D. C.; projects PTDC/QUI-QUI/118315/2010 and PTDC/BBB BQB/0506/2012; PTDC/QEQ-QOR/1434/2014: PTDC/SAUFAR/119389/2010; FCT Investigator to G. J. L. B. and P. M. P. G.; iMed.ULisboa grant UID/DTP/04138/2013), EU (Marie-Curie CIG to G. J. L. B.; Marie-Sklodowska Curie ITN ProteinConjugates to G. J. L. B. and P. M. P. G.), DFG (SI 2117/1-1 to F. S.), CNPq Brazil (fellowship 200456/2015-6 to J. B. B.); Ministerio de Economía y Competitividad, Madrid, Spain (grant CTQ2014-54729-C2-1-P), Junta de Andalucía (grant P12-FQM-2140) and the EPSRC (G. J. L. B.) for financial support. G. J. L. B. is a Royal Society University Research Fellow and the recipient of a European Research Council Starting Grant (TagIt)

Bernardes, GJL

Bertoldo, JB

Cal, PMSD

Gois, PMP

Guerreiro, A

Parente Carvalho, C

Pischel, U

Santos, FMF

Sieglitz, F

This journal is © The Royal Society of Chemistry 2017. This article is licensed under a Creative Commons Attribution 3.0 Unported Licence.Fluorophores are indispensable for imaging biological processes. We report the design and synthesis of azide-tagged boronic acid salicylidenehydrazone (BASHY) dyes and their use for site-selective labelling of Annexin V. The Annexin V-BASHY conjugate maintained function and fluorescence as demonstrated by the targeted detection of apoptotic cells.We thank FCT Portugal (Doctoral Fellowship, SFRH/BD/94779/2013 to F. M. F. S., Postdoctoral Fellowship, SFRH/BPD/103172/2014 to P. M. S. D. C.; projects PTDC/QUI-QUI/118315/2010 and PTDC/BBB BQB/0506/2012; PTDC/QEQ-QOR/1434/2014: PTDC/SAUFAR/119389/2010; FCT Investigator to G. J. L. B. and P. M. P. G.; iMed.ULisboa grant UID/DTP/04138/2013), EU (Marie-Curie CIG to G. J. L. B.; Marie-Sklodowska Curie ITN ProteinConjugates to G. J. L. B. and P. M. P. G.), DFG (SI 2117/1-1 to F. S.), CNPq Brazil (fellowship 200456/2015-6 to J. B. B.); Ministerio de Economía y Competitividad, Madrid, Spain (grant CTQ2014-54729-C2-1-P), Junta de Andalucía (grant P12-FQM-2140) and the EPSRC (G. J. L. B.) for financial support. G. J. L. B. is a Royal Society University Research Fellow and the recipient of a European Research Council Starting Grant (TagIt).info:eu-repo/semantics/publishedVersio

Cal, Pedro M.S.D.

Sieglitz, Florian

Santos, Fábio

Parente Carvalho, Cátia

Guerreiro, Ana

Bertoldo, Jean B.

Pischel, Uwe

Gois, Pedro M. P.

Bernardes, Gonçalo J. L.

Universidade de Lisboa: Repositório.UL

368 | Chem. Commun., 2017, 53, 368--371 This journal is©The Royal Society of Chemistry 2017Cite this:Chem. Commun., 2017,53, 368Site-selective installation of BASHY fluorescentdyes to Annexin V for targeted detection ofapoptotic cells†Pedro M. S. D. Cal,ab Florian Sieglitz,a Fábio M. F. Santos,c Cátia Parente Carvalho,dAna Guerreiro,a Jean B. Bertoldo,b Uwe Pischel,d Pedro M. P. Gois*c andGonçalo J. L. Bernardes*abFluorophores are indispensable for imaging biological processes.We report the design and synthesis of azide-tagged boronic acidsalicylidenehydrazone (BASHY) dyes and their use for site-selectivelabelling of Annexin V. The Annexin V-BASHY conjugate maintainedfunction and fluorescence as demonstrated by the targeted detectionof apoptotic cells.Molecular imaging is a life sciences multidiscipline that reflectsthe analysis of biological processes in living systems at a cellularand molecular level.1–4 Of the current methods available, opticalimaging is perhaps the most relevant because of its high-sensitivity, the use of non-radioactive components, low costand easy access.5–8 Therefore, it is not surprising that the pasttwo decades have witnessed the disclosure of a large number ofoptical imaging probes aimed at evaluating the expression andactivity of specific molecules or biological processes.9,10 Further-more, the conjugation of optical imaging probes with disease-specific ligands such as antibodies enables the targeted imagingof particular tissues which is of key relevance, for example, incancer diagnosis.11 While probes with optimal fluorescenceproperties are often reported, the design of probes equippedwith suitable handles that can be directly used in site-selectiveprotein modification approaches is less common. This is of keyimportance since probe conjugation can often result in fluores-cence quenching or loss of protein function.Very recently we reported the synthesis of a new family ofphotostable fluorescent dyes featuring a tridentate structureobtained by the modular assembly of structurally diverseboronic acids with modular Schiff base ligands.12 This uniquefamily of boronic acid salicylidenehydrazone (BASHY) dyesshow a polarity-dependent emission in the green-to-yellowspectral range, quantum yields as high as 0.6 in non-polarsolvents, and a remarkable brightness similar to other widelyused archetypal fluorophores such as rhodamines or cyaninedyes.13 Additionally, BASHY dyes also exhibit a highly modularstructure that can be easily tuned for different applications.Herein we show that the BASHY fluorescent core can beefficiently modified in order to incorporate a ‘‘clickable’’ handleto site-selectively functionalize a protein probe without com-promising either the dye’s fluorescent properties or the proteinfunction (Fig. 1).Annexin V is a protein used as an early marker of apoptosisby binding to a phospholipid membrane component, phosphatidylserine (PS), which is translocated from the inner to the outer leafletof the plasma membrane during apoptosis.14–16 Heterogeneousmixtures of fluorescently labelled Annexin V are often part ofcommercially available kits for detection of apoptosis. Themultiple, non-site-specific incorporation of fluorescence dyesinto protein biomarkers can however lead to a significantreduction in binding ability. Instead, we envisioned a two-stepstrategy that would allow for precise installation of a BASHYfluorescent probe at a pre-determined site within the amino acidsequence of a biomarker, in this case Annexin V, through strain-promoted azide–alkyne cycloaddition (SPAAC).17–20 Such a strategywould find broad utility not only for Annexin V but also forFig. 1 Proposed site-selective modification of protein biomarkers usingBASHY fluorescent dyes.a Instituto de Medicina Molecular, Faculdade de Medicina, Universidade de Lisboa,Avenida Professor Egas Moniz, 1649-028, Lisboa, Portugal.E-mail: gbernardes@medicina.ulisboa.ptb Department of Chemistry, University of Cambridge, Lensfield Road,CB2 1EW Cambridge, UK. E-mail: gb453@cam.ac.ukc Research Institute for Medicines (iMed.ULisboa), Faculty of Pharmacy,Universidade de Lisboa, Av. Prof. Gama Pinto, 1649-003, Lisboa, Portugal.E-mail: pedrogois@ff.ul.ptd CIQSO – Center for Research in Sustainable Chemistry and Department of Chemistry,University of Huelva, Campus de El Carmen s/n, 21071 Huelva, Spain† Electronic supplementary information (ESI) available: Detailed methods andcharacterisation, fluorescence microscopy images. See DOI: 10.1039/c6cc08671cReceived 28th October 2016,Accepted 25th November 2016DOI: 10.1039/c6cc08671cwww.rsc.org/chemcommChemCommCOMMUNICATIONOpen Access Article. Published on 30 November 2016. Downloaded on 2/21/2022 4:57:23 PM.  This article is licensed under a Creative Commons Attribution 3.0 Unported Licence.View Article OnlineView Journal  | View IssueThis journal is©The Royal Society of Chemistry 2017 Chem. Commun., 2017, 53, 368--371 | 369other more sensitive protein systems where random labellingmay destroy completely protein specific activity.Considering the simple and robust synthetic route based onthe modular assembly of boronic acids with Schiff-base ligands,we thought to introduce a reactive azide handle that is compatiblewith azide–alkyne bioorthogonal ligation reactions. Shortly, dye 3,featuring a carboxylic acid function, was readily prepared fromSchiff-base 1 in 97% isolated yield. This complex smoothly under-went TBTU mediated amidation with 2-azidoethylamine to affordcompound 4 in excellent yields (Fig. 2a). Importantly, the acid (3)or azide (4)-tagged BASHY dyes retained the photophysical proper-ties of the reported BASHY dye,12 including high quantum yields,narrow absorption and emission bands, and high molar absorp-tion coefficients (Fig. 2b and Tables S1, S2, Fig. S1–S3, ESI†).Furthermore, we studied the stability and cytotoxicity of theBASHY probe 4. Importantly, 4 did not react with ethyleneglycolwhich is potentially reactive towards boronic acids (Fig. S4, ESI†)and no toxic effects were observed in two different cell lines(Fig. S5, ESI†).With the azide-tagged BASHY dye 4 in hand, we decided totest its reactivity under SPAAC conditions21 using Annexin Vas a model biomarker. In a first step, it was required to installthe strained-alkyne counterpart on a precise site within thesequence of the protein. Annexin V displays a free, hinderedcysteine (Cys) at position 316, which has been shown to bereactive using a variety of different alkylating and Michael-acceptor reagents including maleimides.22–24 Using commerciallyavailable dibenzocyclooctyne-maleimide (mal-DBCO, 5) that con-tains a reactive maleimide at one end and a strained-cyclooctynering at the other end, we tested a number of conditions forthe reaction of 5 with Annexin V. We found that completeconversion could be achieved when using 25 equivalents of 5 inaqueous buffered solution (TrisHCl, 20 mM. pH 8) for 5 days atroom temperature (Fig. 3 and Table S3, Fig. S6 and S7, ESI†).After purification using size-exclusion chromatography, a singleprotein product corresponding to the mass of DBCO-taggedAnnexin V was detected using liquid-chromatography mass-spectrometry (LC-MS) analysis (Fig. 3). Upon tryptic digest andanalysis using LC-MS/MS, we confirmed that Cys316 is theprimary site of modification (Fig. S8, ESI†).With the strained-alkyne moiety site-selectively installed atCys 316 of Annexin V, we next tested the labelling SPAAC reactionusing the azide-BASHY fluorescent dye 4. Labelling proceededsmoothly in sodium phosphate buffer (NaPi, 50 mM, pH 6) andcompletion was achieved after 6 hours at room temperature(Fig. 3). Gratifyingly, and after purification, a homogenousAnnexin V-BASHY construct was identified by LC-MS analysis(Fig. 3 and Fig. S9, ESI†). The secondary structure proteincontent of the conjugates Annexin V-mal-DBCO and AnnexinV-BASHY was analysed by circular dichroism (Fig. S10, ESI†),showing no significant differences from unmodified Annexin V.In order to have a basis of comparison, a commercially availableazide dye (sulfo-cyanine5 azide – Cy5-N3) was used to label AnnexinV under identical SPAAC conditions. This near-infrared (NIR) opticalprobe was chosen as a reference because it is routinely used inbiological imaging including apoptosis when conjugated toAnnexin V.2,25–27 The site-selectively modified Annexin V-Cy5was used as a specific positive control, since Annexin V is usuallylabelled in a non-selective manner through lysine (Lys) bioconjuga-tion using this dye. We have also prepared an heterogeneous AnnexinV conjugate using an NHS-ester activated fluorescein isothiocyanateisomer I (NHS-FITC).16 Both conjugates were purified to affordtwo fluorescent conjugates, the homogenous Annexin V-Cy5 andheterogeneous Annexin V-FITC (see Fig. S11 and S12, ESI†).The three synthesised and purified conjugates were assessedfor their potential to targeted imaging of apoptotic cells usingFig. 2 (a) One pot-assembly of boronic acid-based heterocycle function-alized with a bioorthogonal handle. (b) Normalized UV/Vis absorption (black)and fluorescence (red) spectra of dye 4 in 5%DMSO/NaPi (50 mM, pH 6).TBTU, O-(benzotriazol-1-yl)-N,N,N0,N0-tetramethyluronium tetrafluoro-borate; DMF, N,N-dimethylformamide.Fig. 3 Reaction of Annexin V (5.0 mM) with 25 equivalents of mal-DBCO 5in TrisHCl buffer (20 mM, pH 8) and 10% DMF, during five days at roomtemperature. Reaction of purified Annexin V-mal-DBCO with 5 equivalentsof BASHY dye 4 in NaPi buffer (50 mM, pH 6) and 10% DMF during 6 hoursat room temperature. Alongside of each conjugate the deconvoluted massspectrum is shown recording the masses for each construct.Communication ChemCommOpen Access Article. Published on 30 November 2016. Downloaded on 2/21/2022 4:57:23 PM.  This article is licensed under a Creative Commons Attribution 3.0 Unported Licence.View Article Online370 | Chem. Commun., 2017, 53, 368--371 This journal is©The Royal Society of Chemistry 2017confocal microscopy.2 For this purpose, we used actinomycin Das an apoptosis inducer and DMSO as the negative control.16HeLa cells were incubated with either actinomycin D or DMSO(control) for 6 hours followed by incubation with AnnexinV-BASHY for 20 minutes. Finally, cells were fixed and the nucleistained with Hoechst 33342 (Fig. 4). The specificity for PSbinding of the homogenous Annexin V-Cy5 dye conjugate andthe heterogenous Annexin V-FITC were also analysed using thesame protocol in separate trials (see Fig. S13–S20). Gratifyingly,the Annexin V-BASHY conjugate was successfully able to targetapoptotic cells with similar efficiency as both control constructs(Fig. 4). Moreover, in a blocking experiment where cells wereincubated with non-fluorescent Annexin V-mal-DBCO beforeaddition of Annexin V-BASHY, we observed a significantdecrease in fluorescence which demonstrates the specificityof the BASHY-tagged biomarker (Fig. S15, ESI†). These datademonstrate the utility of BASHY-protein conjugates builtusing site-selective protein labelling approaches for bioimagingdue to their stability and non-detectable quenching or photo-bleaching. These properties lead to low levels of unselective fluores-cence background and high signal-to-noise ratio, as demonstratedfor the detection of apoptotic cells through confocal microscopy(Fig. S13–S20, ESI†).In this communication, we report for the first time thestructural modification of BASHY fluorescent dyes specificallydesigned for the site-selective labelling of a protein biomarker.The BASHY core was simply modified with an azide-tag withoutaltering the core photophysical properties and was then used ina two-step protocol that enabled the precise installation of thefluorescent dye at position 316 of the apoptosis biomarkerAnnexin V. Importantly, the fluorescence of BASHY wasretained after protein labelling and the conjugate successfullytargeted and detected apoptotic cells maintaining high levels ofspecific activity. Our strategy uses a synthetically accessible corethat permits the facile introduction of ‘‘clickable’’ handles forsubsequent precise protein fluorescent labelling. This strategythat has been successfully demonstrated for the labelling ofAnnexin V and detection of apoptotic cells may find broaderutility when applied to protein biomarkers that are sensitiveand loose their activity when randomly conjugated. Additionally,and as a future application, the reported combined synthesis andprotein site-selective labelling using BASHY dyes, can be particularlyuseful for multimodality imaging applications,28–30 since theBASHY core can act itself as an optimal imaging agent whileallowing attachment of probes used in other imaging modalities(e.g., magnetic resonance imaging (MRI), single photon emissioncomputed tomography (SPECT) or positron emission tomo-graphy (PET)).We thank FCT Portugal (Doctoral Fellowship, SFRH/BD/94779/2013 to F. M. F. S., Postdoctoral Fellowship, SFRH/BPD/103172/2014 to P. M. S. D. C.; projects PTDC/QUI-QUI/118315/2010 and PTDC/BBB BQB/0506/2012; PTDC/QEQ-QOR/1434/2014: PTDC/SAUFAR/119389/2010; FCT Investigator toG. J. L. B. and P. M. P. G.; iMed.ULisboa grant UID/DTP/04138/2013), EU (Marie-Curie CIG to G. J. L. B.; Marie-Sklodowska CurieITN ProteinConjugates to G. J. L. B. and P. M. P. G.), DFG (SI 2117/1-1 to F. S.), CNPq Brazil (fellowship 200456/2015-6 to J. B. B.);Ministerio de Economı́a y Competitividad, Madrid, Spain (grantCTQ2014-54729-C2-1-P), Junta de Andalucı́a (grant P12-FQM-2140)and the EPSRC (G. J. L. B.) for financial support. G. J. L. B. is aRoyal Society University Research Fellow and the recipient of aEuropean Research Council Starting Grant (TagIt).Notes and references1 Z. Y. Chen, Y. X. Wang, Y. Lin, J. S. Zhang, F. Yang, Q. L. Zhou andY. Y. Liao, BioMed Res. Int., 2014, 2014, 819324.2 B. P. Joshi and T. D. Wang, Cancers, 2010, 2, 1251–1287.3 S. Achilefu, Chem. Rev., 2010, 110, 2575–2578.4 A. Signore, S. J. Mather, G. Piaggio, G. Malviya and R. A. Dierckx,Chem. Rev., 2010, 110, 3112–3145.5 M. Herranz and A. Ruibal, J. Oncol., 2012, 2012, 863747.6 F. Leblond, S. C. Davis, P. A. Valdes and B. W. Pogue, J. Photochem.Photobiol., B, 2010, 98, 77–94.7 V. Ntziachristos, Annu. Rev. Biomed. Eng., 2006, 8, 1–33.8 C. McDonagh, C. S. Burke and B. D. MacCraith, Chem. Rev., 2008,108, 400–422.9 D. D. Nolting, M. L. Nickels, N. Guo and W. Pham, Am. J. Nucl. Med.Mol. Imaging, 2012, 2, 273–306.10 W. Zeng, Z. Liu and W. Wang, in Molecular Imaging, ed. B. Schaller,Intech, 2012, ch. 17, DOI: 10.5772/31836.11 R. Alford, M. Ogawa, P. L. Choyke and H. Kobayashi, Mol. BioSyst.,2009, 5, 1279–1291.12 F. M. F. Santos, J. N. Rosa, N. R. Candeias, C. P. Carvalho, A. I. Matos,A. E. Ventura, H. F. Florindo, L. C. Silva, U. Pischel and P. M. P. Gois,Chem. – Eur. J., 2016, 22, 1631–1637.13 L. D. Lavis and R. T. Raines, ACS Chem. Biol., 2014, 9, 855–866.14 E. A. Schellenberger, A. J. Bogdanov, A. Petrovsky, V. Ntziachristos,R. Weissleder and L. Josephson, Neoplasia, 2003, 5, 187–192.15 J. F. Tait, D. F. Gibson and C. Smith, Anal. Biochem., 2004, 329, 112–119.Fig. 4 Confocal microscopy images of HeLa cells treated with 1 mMactinomycin D for 6 hours to induce apoptosis or the vehicle control(0.1% DMSO) followed by incubation with 1 mg ml1 of Annexin V-BASHYfor 20 min. Annexin V-BASHY (green), nuclear Hoechst staining (purple).ChemComm CommunicationOpen Access Article. Published on 30 November 2016. Downloaded on 2/21/2022 4:57:23 PM.  This article is licensed under a Creative Commons Attribution 3.0 Unported Licence.View Article OnlineThis journal is©The Royal Society of Chemistry 2017 Chem. Commun., 2017, 53, 368--371 | 37116 S. E. Logue, M. Elgendy and S. J. Martin, Nat. Protoc., 2009, 4,1383–1395.17 C. S. McKay and M. G. Finn, Chem. Biol., 2014, 2, 1075–1101.18 J. C. Jewetta and C. R. Bertozzi, Chem. Soc. Rev., 2010, 39,1272–1279.19 J. M. Baskin, J. A. Prescher, S. T. Laughlin, N. J. Agard, P. V. Chang,I. A. Miller, A. Lo, J. A. Codelli and C. R. Bertozzi, Proc. Natl. Acad.Sci. U. S. A., 2007, 104, 16793–16797.20 X. Liu, A. L. Miller, K. A. Fundora, M. J. Yaszemski and L. Lu,ACS Macro Lett., 2016, 5, 1261–1265.21 N. J. Agard, J. A. Prescher and C. R. Bertozzi, J. Am. Chem. Soc., 2004,126, 15046–15047.22 X. Li, J. M. Link, S. Stekhova, K. J. Yagle, C. Smith, K. A. Krohn andJ. F. Tait, Bioconjugate Chem., 2008, 19, 1684–1688.23 A. Perreault, J. C. Knight, M. Wang, J. Way and F. Wuest, Amino Acids,2016, 48, 65–74.24 P. Yu, I. Strug, T. R. Cafarella, B. A. Seaton and A. Krantz, Org. Biomol.Chem., 2012, 10, 4500–4504.25 Z. Medarova, S. Bonner-Weir, M. Lipes and A. Moore, Diabetes, 2005,54, 1780–1788.26 V. Ntziachristos, E. A. Schellenberger, J. Ripoll, D. Yessayan, E. Graves,A. Bogdanov, Jr., L. Josephson and R. Weissleder, Proc. Natl. Acad. Sci.U. S. A., 2004, 101, 12294–12299.27 A. Goel, F. Fuerst, E. Hotchkiss and C. R. Boland, Cancer Biol. Ther.,2014, 5, 529–535.28 C. Perez-Medina, D. Abdel-Atti, Y. Zhang, V. A. Longo, C. P. Irwin,T. Binderup, J. Ruiz-Cabello, Z. A. Fayad, J. S. Lewis, W. J. Mulderand T. Reiner, J. Nucl. Med., 2014, 55, 1706–1711.29 L. Sun, J. Ding, W. Xing, Y. Gai, J. Sheng and D. Zeng, BioconjugateChem., 2016, 27, 1200–1204.30 E. A. Rodriguez, Y. Wang, J. L. Crisp, D. R. Vera, R. Y. Tsien andR. Ting, Bioconjugate Chem., 2016, 27, 1390–1399.Communication ChemCommOpen Access Article. Published on 30 November 2016. Downloaded on 2/21/2022 4:57:23 PM.  This article is licensed under a Creative Commons Attribution 3.0 Unported Licence.View Article Online

Chemical Communications

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Site-selective installation of BASHY fluorescent dyes to Annexin V for targeted detection of apoptotic cells

Fluorophores are indispensable for imaging biological processes. We report the design and synthesis of azide-tagged boronic acid salicylidenehydrazone (BASHY) dyes and their use for site-selective labelling of Annexin V. The Annexin V-BASHY conjugate maintained function and fluorescence as demonstrated by the targeted detection of apoptotic cells

Site-selective installation of BASHY fluorescent dyes to Annexin V for targeted detection of apoptotic cells

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