Danzmann, Roy G

Ferguson, Moira M

Moghadam, Hooman K

BMC Genomics

English

PubMed

Hooman K Moghadam

Moira M Ferguson

Roy G Danzmann

Crossref

Comparative genomics and evolution of conserved noncoding elements (CNE) in rainbow trout

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A comparative analysis of the rainbow trout genome with 2 other species of fish (Arctic charr and Atlantic salmon) within the tetraploid derivative Salmonidae family (subfamily: Salmoninae). Genome

A consolidated linkage map for rainbow trout (Oncorhynchus mykiss). Anim Genet

A linkage map for brown trout (Salmo trutta): chromosome homeologies and comparative genome organization with other salmonid fish. Genetics

A microsatellite linkage map of rainbow trout (Oncorhynchus mykiss) characterized by large sex-specific differences in recombination rates. Genetics

A physical map of the genome of Atlantic salmon, Salmo salar. Genomics

A: A simplified protocol for routine total DNA isolation from salmonid fishes.

Ancient noncoding elements conserved in the human genome. Science

Antonarakis SE: Conserved nongenic sequences – an unexpected feature of mammalian genomes. Nat Rev Genet

Antonarakis SE: Evolutionary discrimination of mammalian conserved non-genic sequences (CNGs). Science

Boore JL: Two rounds of whole genome duplication in the ancestral vertebrate. PLoS Biol

Characterisation of conserved noncoding sequences in vertebrate genomes using bioinformatics, statistics and functional studies. Comp Biochem Physiol D: Genomics Proteomics

Clustal W and Clustal X version 2.0. Bioinformatics

Comparative analyses of multi-species sequences from targeted genomic regions. Nature

Conformation-sensitive gel electrophoresis for rapid detection of single-base differences in double-stranded PCR products and DNA fragments: Evidence for solvent-induced bends in DNA heteroduplexes.

Conserved distances between vertebrate highly conserved elements. Hum Mol Genet

COnserved Non-coDing Orthologous Regions

Conserved noncoding sequences are selectively constrained and not mutation cold spots. Nat Genet

Crease TJ: Identification of two QTL influencing upper temperature tolerance in three rainbow trout (Oncorhynchus mykiss) half-sib families. Heredity

Danzmann RG: A genetic linkage map for Arctic charr (Salvelinus alpinus): Evidence for higher recombination rates and segregation distortion in hybrid versus pure strain mapping parents. Genome

Danzmann RG: Evolution of Hox clusters in Salmonidae: A comparative analysis between Atlantic salmon (Salmo salar) and rainbow trout (Oncorhynchus mykiss).

Danzmann RG: Genomic organization of the igf1, igf2, myf5, myf6 and grf/pacap genes across Salmoninae genera. Anim Genet

Danzmann RG: Secondary tetrasomic segregation of MDH-B and preferential pairing of homeologues in rainbow trout. Genetics

de: Major events in the genome evolution of vertebrates: Paranome age and size differ considerably between ray-finned fishes and land vertebrates. Proc Natl Acad Sci USA

de: The gain and loss of genes during 600 million years of vertebrate evolution. Genome Biol

Deletion of ultraconserved elements yields viable mice. PLoS Biology

Dubchak I: VISTA: Visualizing global DNA sequence alignments of arbitrary length. Bioinformatics

Elgar G: Ancient duplicated conserved noncoding elements in vertebrates: A genomic and functional analysis. Genome Res

Elgar G: Chapter 12: Organization of conserved elements near key developmental regulators in vertebrate genomes. Adv Genet

Elgar G: CONDOR: A database resource of developmentally associated conserved noncoding elements.

EM: Megabase deletions of gene deserts result in viable mice. Nature

et al.: Distribution of ancestral proto-Actinopterygian chromosome arms within the genomes of 4R-derivative salmonid fishes (rainbow trout and Atlantic salmon).

et al.: Genome duplication in the teleost fish Tetraodon nigroviridis reveals the early vertebrate proto-karyotype. Nature

Evolution by gene duplication.

Fishes of the world. 4th edition.

Genetic evidence for complex speciation of humans and chimpanzees. Nature

Genomic regulatory blocks encompass multiple neighboring genes and maintain conserved synteny in vertebrates. Genome Res

H: A medaka gene map: the trace of ancestral vertebrate protochromosomes revealed by comparative gene mapping. Genome Res

JD: Physical and genetic mapping of the rainbow trout major histocompatibility regions: Evidence for duplication of the class I region. Immunogenetics

JS: Large-scale appearance of ultraconserved elements in tetrapod genomes and slowdown of the molecular clock. Mol Biol Evol

Quillet E: A type I and type II microsatellite linkage map of rainbow trout (Oncorhynchus mykiss) with presumptive coverage of all chromosome arms.

Ráb P: Chromosome evolution in the Salmonidae (Pisces): An update. Biol Rev Camb Philos Soc

Reconstruction of the vertebrate ancestral genome reveals dynamic genome reorganization in early vertebrates. Genome Res

RG: Evidence for Hox gene duplication in rainbow trout (Oncorhynchus mykiss): A tetraploid model species. J Mol Evol

S: A linkage map of the Atlantic salmon (Salmo salar) based on EST-derived SNP markers.

Screening for molecular pathologies in Lesch-Nyhan syndrome. Hum Mutat

Sekiya T: Detection of polymorphisms of human DNA by gel electrophoresis as single-strand conformation polymorphisms.

Speed TP: GOstat: Find statistically overrepresented Gene Ontologies within a group of genes. Bioinformatics

Talbot WS: Zebrafish comparative genomics and the origins of vertebrate chromosomes. Genome Res

Tetraodon genome analysis provides further evidence for whole-genome duplication in the ray-finned fish lineage. Comp Biochem Physiol D: Genomics Proteomics

The amphioxus genome illuminates vertebrate origins and cephalochordate biology. Genome Res

The medaka draft genome and insights into vertebrate genome evolution. Nature

Thorgaard GH: Assignment of rainbow trout linkage groups to specific chromosomes. Genetics

Thorgaard GH: Tetraploidy and the evolution of salmonid fishes.

Vavouri T: Tuning in to the signals: Noncoding sequence conservation in vertebrate genomes. Trends Genet

Venkatesh B: Rapidly evolving fish genomes and teleost diversity. Curr Opin Genet Dev

Wolfe KH: Extensive genomic duplication during early chordate evolution. Nat Genet

Wolfe KH: Turning a hobby into a job: How duplicated genes find new functions. Nat Rev Genet

WS: The zebrafish gene map defines ancestral vertebrate chromosomes. Genome Res

Yesterday's polyploids and the mystery of diploidization.

YV: Computational approaches to unveiling ancient genome duplications. Nat Rev Genet

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Comparative genomics and evolution of conserved noncoding elements (CNE) in rainbow trout

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