Drake, Barry L

Kim, Hyunsoo

Park, Haesun

English

PubMed

Park Haesun

Kim Hyunsoo

Drake Barry L

Directory of Open Access Journals

BMC Bioinformatics

Extracting unrecognized gene relationships from the biomedical literature via matrix factorizations

Hyunsoo Kim

Haesun Park

Barry L Drake

Springer - Publisher Connector

BioMed Central
Page 1 of 1
(page number not for citation purposes)
BMC Bioinformatics
Open AccessCorrection
Extracting unrecognized gene relationships from the biomedical 
literature via matrix factorizations
Hyunsoo Kim1, Haesun Park*2 and Barry L Drake2
Address: 1Harvard-Partners Center for Genetics and Genomics, Brigham and Women's Hospital, Boston, MA 02115, USA and 2College of 
Computing, Georgia Institute of Technology, Atlanta, GA 30332, USA
Email: Hyunsoo Kim - hskim@cc.gatech.edu; Haesun Park* - hpark@cc.gatech.edu; Barry L Drake - bldrake@cc.gatech.edu
* Corresponding author    
The original article we published [1] lacked adequate attri-
bution and credit to a previously published work [2]
(which is cited in the text below as reference 3 as it was
numbered that in our original article). Thus, we would
like to make the following corrections and we would like
to apologize to the author group and the readers: (1) Page
2, add the citation to the caption of Table 1: "The genes
considered in the data set [3]. The letters 'A', 'C' and 'D' in
brackets show the relation with Alzheimer's disease, can-
cer, and development, respectively." (2) Page 2, amend
the first sentence under heading Results and discussion to:
"For evaluation of our methods, we used 50 genes related
with Alzheimer's disease, cancer, and brain development,
which were constructed and defined in [3]." (3) Page 2,
remove the Reelin signaling pathway and Alzheimer's disease
pathway sections, and insert sentences: "The detailed
descriptions of the Reelin signaling pathway and the
Alzheimer's disease pathway can be found in [3]. Table 2
and 3 show genes associated with these pathways and the
cosine similarities between a core gene for each pathway
(RELN for the Reelin signaling pathway, APP for the
Alzheimer's disease pathway) and genes in the full space
and the reduced dimensional space obtained from NMF."
References
1. Kim H, Park H, Drake BL: Extracting unrecognized gene rela-
tionships from the biomedical literature via matrix factori-
zations.  BMC Bioinformatics 2007, 8(Suppl 9):S6.
2. Homayouri R, Heinrich K, Wei L, Berry MW: Gene clustering by
latent semantic indexing of MEDLINE abstracts.  Bioinformatics
2005, 21:104-115.
Published: 24 April 2008
BMC Bioinformatics 2008, 9:211 doi:10.1186/1471-2105-9-211
Received: 24 April 2008
Accepted: 24 April 2008
This article is available from: http://www.biomedcentral.com/1471-2105/9/211
© 2008 Kim et al; licensee BioMed Central Ltd. 
This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), 
which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.


BL: Extracting unrecognized gene relationships from the biomedical literature via matrix factorizations. BMC Bioinformatics 2007, 8(Suppl 9):S6.

MW: Gene clustering by latent semantic indexing of MEDLINE abstracts. Bioinformatics

http://doaj.org/search?source=%7B%22query%22%3A%7B%22bool%22%3A%7B%22must%22%3A%5B%7B%22term%22%3A%7B%22id%22%3A%220b060f9dec484fe58c1fa1bd12e8c55f%22%7D%7D%5D%7D%7D%7D

Extracting unrecognized gene relationships from the biomedical literature via matrix factorizations

Abstract

Similar works

Full text

Available Versions

Directory of Open Access Journals

Springer - Publisher Connector

Springer - Publisher Connector

Springer - Publisher Connector