A Methodology for Developing Computational Implementations of Scientific Theories

Abstract

“This material is presented to ensure timely dissemination of scholarly and technical work. Copyright and all rights therein are retained by authors or by other copyright holders. All persons copying this information are expected to adhere to the terms and constraints invoked by each author's copyright. In most cases, these works may not be reposted without the explicit permission of the copyright holder." “Copyright IEEE. Personal use of this material is permitted. However, permission to reprint/republish this material for advertising or promotional purposes or for creating new collective works for resale or redistribution to servers or lists, or to reuse any copyrighted component of this work in other works must be obtained from the IEEE.”Computer programs have become a popular representation for scientific theories, particularly for implementing models or simulations of observed phenomena. Expressing a theory as an executable computer program provides many benefits, including: making all processes concrete, supporting the development of specific models, and hence enabling quantitative predictions to be derived from the theory. However, as implementations of scientific theories, these computer programs will be subject to change and modification. As programs change, their behaviour will also change, and ensuring continuity in the scientific value of the program is difficult. We propose a methodology for developing computer software implementing scientific theories. This methodology allows the developer to continuously change and extend their software, whilst alerting the developer to any changes in its scientific interpretation. We introduce tools for managing this development process, as well as for optimising the developed models