Redacción Proteómica

Repositorio Institucional de la Universidad de Córdoba

 23        Scientific ProgramEducational Session Scientific Program 24  Tuesday, February 8 Educational Session: Fundamentals in Proteomics Chairs: Dr. Alberto Paradela, Dra. Lucía Monteoliva, Dr. Miguel Marcilla   Session I: Basics in proteomics analysis  09:45-10:00 Introduction. Dr. Juan Pablo Albar (CNB-CSIC) 10:00-10:45 Proteomics: basic concepts. Dr. Joaquin Abian (IIBB-CSIC) 10:45-11:30 Differential Proteomics: advantages and disadvantages of gel-based strategies. Dr. Montserrat Martínez-Gomariz (PCM-UCM) 11:30-12:00 Coffee break 12:00-12:45 Differential Proteomics: advantages and disadvantages of LC-MS-based strategies. Dr. Miguel Marcilla (CNB-CSIC) 12:45-13:30 Protein Databases: a useful guideline. Dr. José Ramón Valverde (CNB-CSIC) 13:30-14:15 Statistical analysis of proteomics data. Antonio Ramos (CNB-CSIC) 14:15-15:30 Lunch time    Scientific Program Educational Session 25  Tuesday, February 8      Session II: Sample preparation  15:30-16:00 Subcellular fractionation and membrane proteomics. Dr. Lucia Monteoliva (UCM) 16:00-16:30 Phosphoproteomics. Dr. Mª Luisa Hernaez (Parque Científico de Madrid – UCM) 16:30-17:00 Coffee break 17:00-17:30 Plasma Proteomics. Sergio Ciordia (CNB) 17:30-18:00 Peptidomics: Proteomic Analysis of MHC peptides. Dr. Iñaki Alvarez  (UAB)    Abbreviatures:  CNB-CSIC (Centro Nacional de Biotecnología-Consejo Superior de Investigaciones Científicas)  IIBB-CSIC (Instituto de Investigaciones Biomédicas de Barcelona-Consejo Superior de Investigaciones Científicas)  PCM (Parque Científico de Madrid)  UCM (Universidad Complutense de Madrid)  UAB (Universidad Autónoma de Barcelona)   Sponsored by ProteoRed Opening Lectures Scientific Program 26  Tuesday, February 8 Opening Lectures Chairs: Dr. Juan Pablo Albar and Dr. Concha Gil  18:00-18:30 Registration 18:30-19:00 Welcome Chair: Dr. Fernando Corrales, SEProt President.    Opening Lectures 19:00-19:30 A life with gels: from ultrathin gels to IPG-Dalt Dr. Angelika Görg (Technische Universität München, Fachgebiet Proteomik, Freising-Weihenstephan, Germany) 19:30-20:00 Deep Proteomics provides New Insights in Fundamental Cellular Mechanisms Dr. Joel Vandekerckhove (Department of Medical Protein Research, Ghent University, Ghent, Belgium) 21:00 Welcome reception  Sponsored by ProteoRed and Cátedra de Genómica y Proteómica UCM Scientific Program S1. Quantitative Proteomics 27  Wednesday, February 9 Session 1: Quantitative Proteomics Chairs: Dr. Gloría Molero and Dr. Manuel Sánchez del Pino  Plenary Lectures 08:30-09:00 Mapping and measuring complete proteomes Dr. Ruedi Aebersold (Institute of Molecular Systems Biology-ETH, Zurich, Switzerland) 09:00-09:30 Advances in quantitative proteomics: applications to cardiovascular research Dr. Jesús Vázquez (Centro de Biología Molecular Severo Ochoa-CSIC, Madrid,  Spain) 09:30-10:00 Physiological proteomics of Gram-positive bacteria Dr. Jörg Bernhardt (Institut für  Mikrobiologie, E.-M.-Arndt-Universität Greifswald, Greifswald, Germany)  Oral Communications 10:00-10:15 Qualitative and quantitative characterization of exosomes secreted by rat hepatocytes Dr. Eva Rodríguez-Suárez  (CICbioGUNE, Derio, Spain) 10:15-10:30 SWATH-MS: a new data independent acquisition lc-ms methodology for quantitative complete proteome analysis Dr. Pedro Navarro (Institute of Molecular Systems Biology, ETH Zürich, Switzerland) 10:30-10:45 High resolution targeted proteomics: biomarker discovery in a mouse transgenic model of myopathy. Dr. Claire Dauly (Thermo Scientific)  Sponsored by Thermo Scientific   10:45-11:15 Coffee Break  S2: Microbial Proteomics Scientific Program 28  Wednesday, February 9 Session 2: Microbial Proteomics Chairs: Dr. Jesús Jorrín and Dr. Lucía Monteoliva  Plenary Lectures 11:15-11:45 Analysis of genome expression of Rhizobium etli in free living and plant-associated symbiotic state Dr. Sergio Encarnación (Centro de Ciencias Genómicas, Universidad Nacional Autónoma de México, Cuernavaca, Mexico) 11:45-12:15 The Crc protein, a translational repressor that coordinates carbon metabolism  in Pseudomonas Dr. Fernando Rojo (Centro Nacional de Biotecnología-CSIC, Madrid, Spain) 12:15-12:45 Quantitative phosphoproteomics by SILAC-2-DE/MALDI-MS in Helicobacter pylori infected AGS cells Dr. Peter Jungblut (Core Facility Protein Analysis, Max-Planck Institute for Infection Biology, Berlin, Germany)  Oral Communications 12:45-13:00 Proteomics applications to tick research Dr. Margarita Villar  (Instituto de Investigación en Recursos Cinegéticos IREC (CSIC-UCLM-JCCM),Ciudad Real, Spain) 13:00-13:15 Proteomic and phosphoproteomic study of the macrophage response to candida albicans using silac and simac Dr. Jose A. Reales-Calderón  (Facultad de Farmacia, Universidad Complutense de Madrid, Madrid, Spain) 13:15-13:30 ProteOn XPR36: Powerful and flexible protein-to-protein interaction analysis Dr. Marc Martin (Biorad Laboratories)  Sponsored by BIO RAD  13:30-14:30 Lunch 14:30-15:15 Poster Session Scientific Program Quality Control and Standardization in Proteomics Session 29  Wednesday, February 9 Quality Control and Standardization in Proteomics Session Chairs: Dr. Monserrat Martínez and Dr. Alberto Paradela  Plenary Lectures 15:15-15:35 QC in proteomics: lessons from Proteored multicentric experiments Dr. Francesc Canals (Laboratori de Proteomica, Institut de  Recerca- Hospital Universitari Vall d'Hebron, Barcelona, Spain) 15:35-15:55 Quality Control of Proteomics Data: performing local as well as global  analyses Dr. Lennart Martens (Department of Medical Protein Research, VIB, Gent, Belgium) 15:55-16:15 Quality control and standardization efforts at the PRoteomics IDEntifications  (PRIDE) database Dr. Juan Antonio Vizcaino (European Bioinformatics Institute, Hinxton Cambridge, England)  Sponsored by Promega HUPO and EuPA Initiatives Session Scientific Program 30  Wednesday, February 9 HUPO and EuPA Initiatives Session  Chairs: Dr. Fernando Corrales and Dr. César Nombela  Plenary Lectures 16:15-16:45 The gene-centric Human Proteome Project: organisation, scope and limitations Dr. Thierry Rabilloud (Biochemistry and Biophysics of Integrated Systems, CEA Grenoble, iRTSV/BSBBSI, Grenoble, Francia) 16:45-17:15 Differential Protein Expression Analysis in Patients within Lung Cancer Studies Dr. Gyorgy Marko-Varga  (Clinical Protein Science and Imagining, Dpt. Measurement Technology and industrial Electrical Engineering,  University of Lund, Lund, Sweden) Sponsored by Agilent Technologies Scientific Program S3: Post-Translational Proteomics 31  Thursday, February 10 Session 3: Post-Translational Proteomics  Chairs: Dr. Montserrat Carrascal and Dr. Juan José Calvete Plenary Lectures 08:30-09:00 Modification specific proteomics; Identification and quantitation of phosphorylated proteins and sialylated glycoproteins derived from primary biological material. Dr. Martin Larsen (Department of Biochemistry and Molecular Biology.University of Southern Denmark, Odense, Denmark) 09:00-09:30 Quantitative characterization of p-sites from the human T-lymphocyte phosphoproteome using isotopic labeling and mass spectrometry Dr. Joaquin Abian (Laboratori de Proteómica-CSIC-Universitat Autónoma de Barcelona, Barcelona, Spain) 09:30-10:00 Unraveling cancer signaling pathways using global phosphoproteomic approaches Dr. Akhilesh Pandey (McKusick-Nathans Institute of Genetic Medicine, Departments of Biological Chemistry, Oncology, Pathology, Johns-Hopkins University School of Medicine, Baltimore, Maryland, USA)  Oral Communications 10:00-10:15 Differential redox proteomics allows identification of proteins reversibly oxidized in cysteines in endothelial cells in respone to acute Dr. Antonio Martínez-Ruiz (Hospital Universitario de La Princesa, Instituto de Investigación Sanitaria Princesa (IP), Madrid, Spain) 10:15-10:30 New clues to metabolic regulation through changes in the thiol redox proteome Dr. Jose A. Bárcena (University of Córdoba, Córdoba, Spain) 10:30-10:45 The implementation and characterization of electron transfer dissociation (ETD) on an ion mobility enabled Q-TOF mass spectrometer. Dr. Keith Compson. (Waters Corporation)  Sponsored by   10:45-11:15 Coffee Break S4: Structural Proteomics: Interactions, Networks and Complexes Scientific Program 32  Thursday, February 10 Session 4: Structural Proteomics: Interactions Networks and Complexes  Chairs: Dr. Severine Gharbi and Dr. Fernando Vivanco  Plenary Lectures 11:15-11:45 Combining 3D structures with protein quantification to understand cell type specific epidermal growth factor receptor signal processing Dr. Christina Kiel (EMBL-CRG Systems Biology Unit, Design of Biological   Systems, Centre de Regulació Genòmica, Barcelona, Spain). 11:45-12:15 Determination and analysis of protein interaction networks Dr. Florencio Pazos (Centro Nacional de Biotecnología-CSIC, Madrid, Spain)  Oral Communications 12:15-12:30 Phosphorylation-based signaling networks mediate the effect of ligand affinity on the activation of naive primary t-cells Dr. Mónica Carrera (Institute of Molecular Systems Biology, ETH, Zürich, Switzerland) 12:30-12:45 Intensity-fading and other ms approaches to analyze proteases and protease inhibitors and their interactions in biological samples Dr. Francesc X. Aviles  (Institut de Biotecnologia i de Biomedicina (IBB) & Dept. Bioquímica, Universitat Autonoma de Barcelona, Barcelona, Spain) 12:45-13:00 Helping resolve the interactome by means of label free interaction analysis. Dr. Silvia Pileri. (GE Healthcare).  Sponsored by GE Healthcare  13:15-14:15 Lunch 14:15-15:00 Poster Session Scientific Program S5: Computational Proteomics 33  Thursday, February 10 Session 5: Computational Proteomics  Chairs: Dr. Alex Campos and Dr. Eliandre de Oliveira  Plenary Lectures 15:00-15:30 Computational methods for exploring protein isoforms based on MS data Dr. Rhune Matthiesen (Instituto de Patologia e Imunologia Molecular da Universidade do Porto (IPATIMUP), Porto, Portugal) 15:30-16:00 Computer-aided identification of potential drug targets and vaccine   candidates in bacterial proteomes Dr. Xabier Daura Ribera (Institut de Biotecnología i Biomedicina (IBB), Universitat Autònoma de Barcelona, Barcelona, Spain) 16:00-16:30 neXtProt: the new human protein knowledge resource Dr. Amos Bairoch (Swiss Institute of Bioinformatics. Dpt. of Structural Biology and Bioinformatics, Genève, Switzerland) 16:30-17:00 Dedicated resources for PTM identification Dr. Patricia Palagi (Swiss Institute of Bioinformatics, Geneva , Switzerland)  Oral Communications 17:00-17:15 MIAPE web toolkit: a user-friendly work frame to connect and share proteomics standards in the lab Dr. J.Alberto Medina-Aunon (Centro Nacional de Biotecnología-CSIC/ProteoRed, Madrid, Spain) 17:15-17:30 A general statistical framework for the integration and ontological analysis of quantitative proteomics experiments by stable isotope Marco Trevisan-Herraz (Centro de Biología Molecular Severo Ochoa-CSIC-UAM, Madrid, Spain) 17:45-18:15 Coffee Break 18:15-19:15 SEProt Awards  (Sponsored by Bruker Daltonics and Celta Ingenieros) 19:15-20:15 SEProt General Meeting  21:00 Congress Dinner S6: Biomarker Discovery and Validation Scientific Program 34  Friday, February 11 Session 6: Biomarker Discovery and Validation Chairs: Dr. Ignacio Casal and Dr. Ángel García Plenary Lectures 09:30-10:00 Sleeping sickness biomarkers: the quest for a neglected disease holy grail Dr. Jean Charles Sanchez (Biomedical Proteomics Group, Department of Structural Biology and Bioinformatics, Faculty of Medicine, University  of Geneva, Switzerland) 10:00-10:30 Biomarker Discovery for diagnostic, prognostic and therapeutic response in Rheumatic Diseases Dr. Francisco Blanco (Plataforma de Proteómica INIBIC-CHUAC,  A Coruña, Spain) 10:30-11:00 Label-free quantitative proteomics targeted to sub-cellular compartments for candidate biomarker discovery in colorectal cancer Dr. Connie Jimenez (Department of Medical Oncology,OncoProteomics Laboratory, VU University Medical Center,  Amsterdam, The Netherlands)  Oral Communications 11:00-11:15 Proteins involved in platelet activation by GPVI and alphaiibbeta3 receptors are differentially regulated in acute coronary syndrome: a platelet proteomics study Dr. Andrés F. Parguiña (Universidade de Santiago de Compostela, Santiago de Compostela, Spain) 11:15-11:30 Early diagnostic of B cell chronic leukemia by novel biomarkers. Dr. Manuel Fuentes  (Centro de Investigación del Cáncer, Universidad de Salamanca-CSIC, Salamanca, Spain) 11:30-11:45 Simultaneous compound Quantification and Identification using High Resolution MS: The AB SCIEX TripleTOF™ 5600 System.  Dr. Antonio Serna (ABSciex)  Sponsored by AB Sciex  11:45-12:15 Coffee Break Scientific Program Closing Lecture 35  Friday, February 11 Closing Lecture Chairs: Dr. Juan Pablo Albar and Dr. Concha Gil  Closing Lecture 12:15-13:15 In taberna quando sumus: a drunkard's cakewalk through proteomics Dr. Pier Giorgio Righetti (Politecnico di Milano, Department of Chemistry, Milan,  Italy) 13:30 Farewell Sponsored by ProteoRed and Cátedra de Genómica y Proteómica UCM 

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Repositorio Institucional de la Universidad de Córdoba