Paun, Gheorghe

idUS. Depósito de Investigación Universidad de Sevilla

A Bibliography of Spiking Neural P SystemsGheorghe Pa˘unInstitute of Mathematics of the Romanian AcademyPO Box 1-764, 014700 Bucures¸ti, RomaniaandDepartment of Computer Science and Artificial IntelligenceUniversity of SevillaAvda. Reina Mercedes s/n, 41012 Sevilla, Spaingeorge.paun@imar.ro, gpaun@us.esWhat follows is a bibliography of spiking neural P systems (SN P systems, forshort), at the level of April 2009. This bibliography is included in the presentvolume having in mind the fact that this research area attracted much interestin the few years since it was initiated, so that it might be useful to the reader tohave a comprehensive list of titles at hand, as complete as we were able to compileit. Of course, most of this information can also be found in the membrane com-puting website, at http://ppage.psystems.eu, with a comprehensive survey alsoprovided by the chapter devoted to SN P systems in the Handbook of MembraneComputing (Gh. Pa˘un, G. Rozenberg, A. Salomaa, eds.), Oxford University Press,2009. The list which follows also includes the papers on SN P systems presentin the present volume (with the indication “in the present volume”); the papersfrom the previous proceedings volumes of the Brainstorming Week on MembraneComputing are given with indications of the form “BWMC2007” with the obviousmeaning, then specifying the pages. The three brainstorming volumes cited in thisway are:1. M.A. Gutie´rrez-Naranjo, et al., eds.: Fourth Brainstorming Week on MembraneComputing, Sevilla, January 30-February 3, 2006, vol. I and II, Fenix Editora,Sevilla, 2006.2. M.A. Gutie´rrez-Naranjo, et al., eds.: Fiftth Brainstorming Week on MembraneComputing, Sevilla, January 29-February 2, 2007, Fenix Editora, Sevilla, 2007.3. D. Diaz-Pernil, et al., eds.: Sixth Brainstorming Week on Membrane Comput-ing, Sevilla, February 4-8, 2008, Fenix Editora, Sevilla, 2008.For some of the papers it is indicated only the year, this meaning that the infor-mation we had when compiling the list was that the paper was still unpublished.208 Gh. Pa˘un1. A. Alhazov, R. Freund, M. Oswald, M. Slavkovik: Extended variants of spik-ing neural P systems generating strings and vectors of non-negative integers.WMC7, 2006, 88–101, and Membrane Computing, WMC2006, Leiden, Re-vised, Selected and Invited Papers, LNCS 4361, Springer, 2006, 123–134.2. A. Binder, R. Freund, M. Oswald: Extended spiking neural P systems withastrocytes - variants for modelling the brain. Proc. 13th Intern. Symp. ALand Robotics, AROB2008, Beppu, Japan, 520–524.3. A. Binder, R. Freund, M. Oswald, L. Vock: Extended spiking neural P systemswith excitatory and inhibitory astrocytes. Submitted, 2007.4. M. Cavaliere, E. Egecioglu, O.H. Ibarra, M. Ionescu, Gh. Pa˘un, S. Woodworth:Asynchronous spiking neural P systems; decidability and undecidability. Proc.DNA13, LNCS 4848, Springer, 2007.5. M. Cavaliere, E. Egecioglu, O.H. Ibarra, M. Ionescu, Gh. Pa˘un, S. Woodworth:Asynchronous spiking neural P systems. Theoretical Computer Sci., 2009.6. M. Cavaliere, I. Mura: Experiments on the reliability of stochastic spikingneural P systems. Natural Computing, 7, 4 (2008), 453–470.7. R. Ceterchi, A.I. Tomescu: Spiking neural P systems – a natural model forsorting networks. BWMC2008, 93–106.8. H. Chen, R. Freund, M. Ionescu, Gh. Pa˘un, M.J. Pe´rez-Jime´nez: On stringlanguages generated by spiking neural P systems. BWMC2006, vol. I, 169–194, and Fundamenta Informaticae, 75, 1-4 (2007), 141–162.9. H. Chen, M. Ionescu, T.-O. Ishdorj: On the efficiency of spiking neural P sys-tems. BWMC2006, vol. I, 195–206, and Proc. 8th Intern. Conf. on Electronics,Information, and Communication, Ulanbator, Mongolia, June 2006, 49–52.10. H. Chen, M. Ionescu, T.-O. Ishdorj, A. Pa˘un, Gh. Pa˘un, M.J. Pe´rez-Jime´nez:Spiking neural P systems with extended rules: Universality and languages.Natural Computing, 7, 2 (2008), 147–166.11. H. Chen, M. Ionescu, A. Pa˘un, Gh. Pa˘un, B. Popa: On trace languages gener-ated by spiking neural P systems. BWMC2006, vol. I, 207–224, and Eighth In-ternational Workshop on Descriptional Complexity of Formal Systems (DCFS2006), June 21-23, 2006, Las Cruces, New Mexico, USA, 94–105.12. H. Chen, T.-O. Ishdorj, Gh. Pa˘un: Computing along the axon. BWMC2006,vol. I, 225–240, and Pre-proceedings BIC-TA, Wuhan, 2006, 60-70, and Progressin Natural Science, 17, 4 (2007), 418–423.13. H. Chen, T.-O. Ishdorj, Gh. Pa˘un, M.J. Pe´rez-Jime´nez: Spiking neural P sys-tems with extended rules. BWMC2006, vol. I, 241–266.14. H. Chen, T.-O. Ishdorj, Gh. Pa˘un, M.J. Pe´rez-Jime´nez: Handling languageswith spiking neural P systems with extended rules. Romanian J. InformationSci. and Technology, 9, 3 (2006), 151–162.15. R. Freund, M. Ionescu, M. Oswald: Extended spiking neural P systems withdecaying spikes and/or total spiking. ACMC/FCT 2007 Workshop, Budapest,Intern. J. Found. Computer Sci., 19 (2008), 1223–1234.16. R. Freund, M. Oswald: Spiking neural P systems with inhibitory axons. AROBConf., Japan, 2007.A Bibliography of SN P Systems 20917. R. Freund, M. Oswald: Regular ω-languages defined by extended spiking neuralP systems. Fundamenta Informaticae, 83, 1-2 (2008), 65–73.18. M. Garcia-Arnau, D. Pe´rez, A. Rodriguez-Pato´n, P. Sosik: On the power ofelementary operations in spiking neural P systems. Submitted, 2008.19. M. Garcia-Arnau, A. Rodriguez-Pato´n, D. Pe´rez, P. Sosik: Spiking neural Psystems: Stronger normal forms. BWMC2007, 157–178.20. M.A. Gutie´rrez-Naranjo, A. Leporati: Solving numerical NP-complete prob-lems by spiking neural P systems with pre-computed resources. BWMC2008,193–210.21. M.A. Gutie´rrez-Naranjo, A. Leporati: Performing arithmetic operations withspiking neural P systems. In the present volume.22. M.A. Gutie´rrez-Naranjo, M.J. Pe´rez-Jime´nez. A first model for Hebbian learn-ing with spiking neural P systems. BWMC2008, 211–234.23. O.H. Ibarra, A. Pa˘un, Gh. Pa˘un, A. Rodriguez-Pato´n, P. Sosik, S. Woodworth:Normal forms for spiking neural P systems. BWMC2006, vol. II, 105–136, andTheoretical Computer Sci., 372, 2-3 (2007), 196–217.24. O.H. Ibarra, A. Pa˘un, A. Rodriguez-Pato´n: Sequentiality induced by spikenumbers in SN P systems. Proc. 14th Intern. Meeting on DNA Computing,Prague, June 2008, 36–46.25. O.H. Ibarra, S. Woodworth: Characterizations of some restricted spiking neuralP systems. and Membrane Computing, WMC2006, Leiden, Revised, Selectedand Invited Papers, LNCS 4361, Springer, 2006, 424–442.26. O.H. Ibarra, S. Woodworth: Spiking neural P systems: some characterizations.Proc. FCT 2007, Budapest, LNCS 4639, 23–37.27. O.H. Ibarra, S. Woodworth: Characterizing regular languages by spiking neuralP systems. Intern. J. Found. Computer Sci., 18, 6 (2007), 1247–1256.28. O.H. Ibarra, S. Woodworth, F. Yu, A. Pa˘un: On spiking neural P systems andpartially blind counter machines. Proc. UC2006, LNCS 4135, Springer, 2006,113–129.29. M. Ionescu, A. Pa˘un, Gh. Pa˘un, M.J. Pe´rez-Jime´nez: Computing with spikingneural P systems: Traces and small universal systems. Proc. DNA12 (C. Mao,Y. Yokomori, B.-T. Zhang, eds.), Seul, June 2006, 32–42, and DNA Computing.12th Intern. Meeting on DNA Computing, DNA12, Seoul, Korea, June 2006,Revised Selected Papers (C. Mao, T. Yokomori, eds.), LNCS 4287, Springer,2007, 1–16.30. M. Ionescu, Gh. Pa˘un, T. Yokomori: Spiking neural P systems. FundamentaInformaticae, 71, 2-3 (2006), 279–308.31. M. Ionescu, Gh. Pa˘un, T. Yokomori: Spiking neural P systems with an exhaus-tive use of rules. Intern. J. Unconventional Computing, 3, 2 (2007), 135–154.32. M. Ionescu, D. Sburlan: Some applications of spiking neural P systems. Proc.WMC8, Thessaloniki, June 2007, 383–394, and Computing and Informatics,27 (2008), 515–528.33. M. Ionescu, C.I. Tˆırna˘uca˘, C. Tˆırna˘uca˘: Dreams and spiking neural P systems.Romanian J. Inform. Sci. and Technology, 12 (2009), in press.210 Gh. Pa˘un34. T.-O. Ishdorj, A. Leporati: Uniform solutions to SAT and 3-SAT by spikingneural P systems with pre-computed resources. Natural Computing, to appear.35. T.-O. Ishdorj, A. Leporati, L. Pan, X. Zeng, X. Zhang: Deterministic solutionsto QSAT and Q3SAT by spiking neural P systems with pre-computed resources.In the present volume.36. A. Leporati, G. Mauri, C. Zandron, Gh. Pa˘un, M.J. Pe´rez-Jime´nez: Uniformsolutions to SAT and Subset-Sum by spiking neural P systems. Submitted,2007.37. A. Leporati, C. Zandron, C. Ferretti, G. Mauri: On the computational powerof spiking neural P systems. BWMC2007, 227–246.38. A. Leporati, C. Zandron, C. Ferretti, G. Mauri: Solving numerical NP-completeproblems with spiking neural P systems. Proc. WMC8, Thessaloniki, June2007, 405–424.39. V.P. Metta, K. Krithivasan: Spiking neural P systems and Petri nets. Submit-ted, 2008.40. J.M. Mingo: Una approximacion al control neural del sueno de ondas lentasmediante spiking neural P systems. Submitted, 2008.41. J.M. Mingo: Sleep-awake switch with spiking neural P systems: A basic pro-posal and new issues. In the present volume.42. T. Neary: A small universal spiking neural P system. Intern. Workshop. Com-puting with Biomolecules (E. Csuhaj-Varju et al., eds.), Viena, 2008, 65–74.43. T. Neary: On the computational complexity of spiking neural P systems. Un-conventional Computation. 7th Intern. Conf. Vienna, 2008 (C.S. Calude atal., eds.), LNCS 5204, 2008, 189–205.44. A. Obtulowicz: Spiking neural P systems and modularization of complex net-works from cortical neural network to social networks. In the present volume.45. L. Pan, Gh. Pa˘un: New normal forms for spiking neural P systems. In thepresent volume.46. L. Pan, Gh. Pa˘un: Spiking neural P systems with anti-spikes. In the presentvolume.47. L. Pan, Gh. Pa˘un, M.J. Pe´rez-Jime´nez: Spiking neural P systems with neurondivision and budding. In the present volume.48. L. Pan, Gh. Pa˘un, M.J. Pe´rez-Jime´nez: Spiking neural P systems: A shortintroduction and new normal forms, Advanced Computational Tehcnologies(C. Ena˘chescu, F. Filip, B. Iantovics, eds.), Ed. Academiei, Bucures¸ti, 2009.49. L. Pan, J. Wang, H.J. Hoogeboom: Excitatory and inhibitory neural P systems.Submitted, 2007.50. A. Pa˘un, Gh. Pa˘un: Small universal spiking neural P systems. BioSystems, 90,1 (2007), 48–60.51. Gh. Pa˘un: Languages in membrane computing. Some details for spiking neuralP systems. Proc. 10th DLT Conf. (invited talk), Santa Barbara, USA, 2006,LNCS 4036, Springer, Berlin, 2006, 20–35.52. Gh. Pa˘un: Twenty six research topics about spiking neural P systems.BWMC2007, 263–280.A Bibliography of SN P Systems 21153. Gh. Pa˘un: A quick overview of membrane computing with some details aboutspiking neural P systems. Frontiers of Computer Science in China, 1,1 (2007),37–49.54. Gh. Pa˘un: Spiking neural P systems. A tutorial. Bulletin of the EATCS, 91(Febr. 2007), 145–159.55. Gh. Pa˘un: Spiking neural P systems. Power and efficiency. Bio-Inspired Mod-eling of Cognitive Tasks, Proc. IWINAC 2007 (J. Mira, J.R. Alvarez, eds.),Mar Menor, 2007, LNCS 4527, 153–169.56. Gh. Pa˘un: Spiking neural P systems used as acceptors and transducers. CIAA2007, 12th Conf., Prague, July 2007, LNCS 4783 (J. Holub, J. Zdarek, eds.),Springer, Berlin, 2007, 1–4.57. Gh. Pa˘un: Spiking neural P systems with astrocyte-like control. JUCS, 13, 11(2007), 1707–1721.58. Gh. Pa˘un, M.J. Pe´rez-Jime´nez: Spiking neural P systems. Recent results, re-search topics. Submitted, 2007.59. Gh. Pa˘un, M.J. Pe´rez-Jime´nez: Spiking neural P systems. An overview. Ad-vancing Artificial Intelligence through Biological Process Applications (A.B.Porto, A. Pazos, W. Buno, eds.), Medical Information Science Reference, Her-shey, New York, 2008, 60–73.60. Gh. Pa˘un, M.J. Pe´rez-Jime´nez, G. Rozenberg: Spike trains in spiking neuralP systems. Intern. J. Found. Computer Sci., 17, 4 (2006), 975–1002.61. Gh. Pa˘un, M.J. Pe´rez-Jime´nez, G. Rozenberg: Computing morphisms by spik-ing neural P systems. Intern. J. Found. Computer Sci., 18, 6 (2007), 1371–1382.62. Gh. Pa˘un, M.J. Pe´rez-Jime´nez, G. Rozenberg: Infinite spike trains in spikingneural P systems. Manuscript, 2005.63. Gh. Pa˘un, M.J. Pe´rez-Jime´nez, A. Salomaa: Bounding the indegree of spikingneural P systems. TUCS Technical Report 773, 2006.64. Gh. Pa˘un, M.J. Pe´rez-Jime´nez, A. Salomaa: Spiking neural P systems. Anearly survey. Intern. J. Found. Computer Sci., 18 (2007), 435–456.65. D. Ramirez-Martinez, M.A. Gutie´rrez-Naranjo: A software tool for dealingwith spiking neural P systems. BWMC2007, 299–314.66. J. Wang, T.-O. Ishdorj, L. Pan: Efficiency of spiking neural P systems. In thepresent volume.67. X. Zeng, X. Zhang, L. Pan: Homogeneous spiking neural P systems. Submitted,2009.68. X. Zhang, T.-O. Ishdorj, X. Zeng, L. Pan: Solving PSPACE-complete problemsby spiking neural P systems with pre-computed resources. Submitted, 2008.69. X. Zhang, Y. Jiang, L. Pan: Small universal spiking neural P systems withexhaustive use of rules. Proc. Third Intern. Conf. on Bio-Inspired Computing.Theory and Appl., Adelaide, 2008, 117–127.70. X. Zhang, J. Wang, L. Pan: A note on the generative power of axon P systems.Intern. J. CCC, 4, 1 (2009), 92–98.212 Gh. Pa˘un71. X. Zhang, X. Zeng, L. Pan: On string languages generated by SN P systemswith exhaustive use of rules. Natural Computing, 7 (2008), 535–549.72. X. Zhang, X. Zeng, L. Pan: Smaller universal spiking neural P systems. Fun-damenta Informaticae, 87 (2008), 117–136.73. X. Zhang, X. Zeng, L. Pan: On string languages generated by asyn-chronous spiking neural P systems. Theoretical Computer Science, DOI:10.1016/j.tcs.2008.12.055.

A Bibliography of Spiking Neural P Systems

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A Bibliography of Spiking Neural P Systems

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idUS. Depósito de Investigación Universidad de Sevilla