Motivated by spectral analysis of replicated brain signal time series, we
propose a functional mixed effects approach to model replicate-specific
spectral densities as random curves varying about a deterministic
population-mean spectrum. In contrast to existing work, we do not assume the
replicate-specific spectral curves to be independent, i.e. there may exist
explicit correlation between different replicates in the population. By
projecting the replicate-specific curves onto an orthonormal wavelet basis,
estimation and prediction is carried out under an equivalent linear mixed
effects model in the wavelet coefficient domain. To cope with potentially very
localized features of the spectral curves, we develop estimators and predictors
based on a combination of generalized least squares estimation and nonlinear
wavelet thresholding, including asymptotic confidence sets for the
population-mean curve. We derive risk bounds for the nonlinear wavelet
estimator of the population-mean curve, a result that reflects the influence of
correlation between different curves in the replicate-population, and we derive
consistency of the estimators of the inter- and intra-curve correlation
structure in an appropriate sparseness class of functions. To illustrate the
proposed functional mixed effects model and our estimation and prediction
procedures, we present several simulated time series data examples and we
analyze a motivating brain signal dataset recorded during an associative
learning experiment