Bowler, C.

De Veylder, L.

Falciatore, A.

Fortunato, A.E.

Huysman, M.J.J.

Inzé, D.

Matthijs, M.

Van den Daele, H.

Vyverman, W.

Open Marine Archive

Unravelling the light-dependent cell cycle onset in diatoms 
Huysman Marie J.J.1,2,3,4,5, Antonio E. Fortunato4, Michiel Matthijs1,2,3, Hilde Van den Daele2,3, Dirk 
Inzé2,3, Chris Bowler5, Angela Falciatore4, Lieven De Veylder2,3 and Wim Vyverman1 
1 Protistology and Aquatic Ecology, Department of Biology, Ghent University, B-9000 Gent, Belgium 
E-mail: Marie.Huysman@UGent.be  
2 Department of Plant Systems Biology, VIB, B-9052 Gent, Belgium 
3 Department of Plant Biotechnology and Bioinformatics, Ghent University, B-9052 Gent, Belgium  
4 Laboratoire de Génomique des Microorganismes, Université Pierre et Marie Curie, CNRS UMR  
7238, 75006 Paris, France 
5 Environmental and Evolutionary Genomics Section, Institut de Biologie de l’Ecole Normale 
Supérieure, CNRS UMR8186 INSERM U1024, Ecole Normale Supérieure, 75230 Paris Cedex 05, 
France  
 
Despite the enormous importance of diatoms in aquatic ecosystems and their broad industrial 
potential, little is known about their life cycle control. Diatoms typically inhabit rapidly changing 
and unstable environments, suggesting that cell cycle regulation in diatoms must have evolved to 
adequately integrate various environmental signals.  
 
From the first genome analyses of Thalassiosira pseudonana (Armbrust et al., 2007) and 
Phaeodactylum tricornutum (Bowler et al., 2008), it became clear that the cyclin family in diatoms 
represents an expanded gene family. By comparative analysis of cyclin abundance among several 
closely related Chromalveolate species, this expansion was found to be specific to diatoms. In 
addition, phylogenetic analysis of the cyclin gene family lead to the discovery of a novel type of 
cyclins, the diatom-specific cyclins (dsCYCs) (Huysman et al., 2010). Their early expression during 
the cell cycle, and the induction of several members upon changing nutrient or light conditions, 
hints at a role for the dsCYCs in transduction of the environmental status of the cell to the cell cycle 
machinery. Related to this, a crucial role in regulating cell cycle onset upon light exposure was 
found for one of these dsCYCs (dsCYC2). This cyclin was found as one of the first cell cycle genes 
expressed upon release by illumination of dark-arrested cells (Huysman et al., 2010). In addition, 
silencing of dsCYC2 interferes with normal cell cycle progression, suggesting that it is crucial to the 
control of the light-dependent G1-checkpoint in diatoms. The light-regulated transcription of 
dsCYC2 and control of cell cycle onset is further demonstrated by its specific response to various 
spectral qualities (white, blue and red light) at different light intensities.  
 
The results that will be presented here give more insights into the molecular mechanisms that 
tightly regulate the onset of the cell cycle machinery upon light exposure. They will contribute to 
our understanding of how diatoms succeed to respond adequately and rapidly to changing light 
conditions and will help to explain how diatoms gained this competitive advantage over other 
marine phototrophs during evolution. From an economic perspective the results will be useful for 
studies that aim to optimize diatom and algal cultivation techniques for industrial applications.  
 
References 
Armbrust E.V., J.A. Berges, C. Bowler, B.R. Green, D. Martinez, et al. 2004. The genome of the 
diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Science 306:79-86. 
Bowler C., A.E. Allen, J.H. Badger, J. Grimwood, K. Jabbari, et al. 2008. The Phaeodactylum genome 
reveals the evolutionary history of diatom genomes. Nature 456:239-244.  
Huysman M.J.J., C. Martens, K. Vandepoele, J. Gillard, E. Rayko, M. Heijde, C. Bowler, D. Inzé, 
Y. Van de Peer, L. De Veylder and W. Vyverman. 2010. Genome-wide analysis of the diatom cell 
cycle unveils a novel type of cyclins involved in environmental signaling. Genome Biology 
11:R17. 
 
 
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Unravelling the light-dependent cell cycle onset in diatoms

Unravelling the light-dependent cell cycle onset in diatoms

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