A novel algorithm and implementation of real-time identification and tracking
of blob-filaments in fusion reactor data is presented. Similar spatio-temporal
features are important in many other applications, for example, ignition
kernels in combustion and tumor cells in a medical image. This work presents an
approach for extracting these features by dividing the overall task into three
steps: local identification of feature cells, grouping feature cells into
extended feature, and tracking movement of feature through overlapping in
space. Through our extensive work in parallelization, we demonstrate that this
approach can effectively make use of a large number of compute nodes to detect
and track blob-filaments in real time in fusion plasma. On a set of 30GB fusion
simulation data, we observed linear speedup on 1024 processes and completed
blob detection in less than three milliseconds using Edison, a Cray XC30 system
at NERSC.Comment: 14 pages, 40 figure
