nf-core/funcscan: 1.1.4 - British Beans on Toast (Patch) - 2023-11-07

Abstract

<h2>v1.1.4 - [2023-11-07]</h2> <h3><code>Added</code></h3> <h3><code>Fixed</code></h3> <ul> <li><a href="https://github.com/nf-core/funcscan/pull/306">#306</a> Added new parameter <code>annotation_prokka_retaincontigheaders</code> to allow prokka to retain the original contig headers/locus tag. (by @darcy220606)</li> <li><a href="https://github.com/nf-core/funcscan/pull/307">#307</a> Fixed stability of deepARG tests by using Zenodo copy of database (❤️ to Gustavo Arango and Liqing Zhang for uploading, fix by @jfy133)</li> <li><a href="https://github.com/nf-core/funcscan/pull/310">#310</a> Fixed error when supplying uncompressed input; added "fas" file extension for FASTA files. (by @tavareshugo)</li> <li><a href="https://github.com/nf-core/funcscan/pull/311">#311</a> Merged pipeline template of nf-core/tools version 2.10. (by @jasmezz)</li> </ul> <h3><code>Dependencies</code></h3> <p>| Tool | Previous version | New version | | ------------- | ---------------- | ----------- | | AMRFinderPlus | 3.10.42 | 3.11.18 | | Bakta | 1.7.0 | 1.8.2 | | MultiQC | 1.14 | 1.15 |</p> <h3><code>Deprecated</code></h3> <ul> <li>FastQC</li> </ul&gt