The outbreaks of two strains of rabbit haemorrhagic disease (RHD) (GI.1 and GI.2) in
the Iberian Peninsula have caused substantial economic losses in commercial rabbitries and have
affected the conservation of rabbit-sensitive predators due to the dramatic decline of their natural
populations. However, the assessment of the impact of both RHD strains on wild rabbit populations
has been limited to a few small-scale studies. Little is known about the overall impact within its
native range. In this study, we described and compared the effects of GI.1 and GI.2 countrywide by
using time series of hunting bag data widely available across the country and compared their trend
during the first eight years after the first outbreak of GI.1 (i.e., 1998) and GI.2 (i.e., 2011), respectively.
We used Gaussian generalised additive models (GAM) with the number of hunted rabbits as the
response variable and year as the predictor to evaluate the non-linear temporal dynamics of the
population at the national and regional community levels. The first GI.1 caused a population decline
of around 53%, affecting most Spanish regional communities where the disease occurred. The positive
trend observed after GI.1 in Spain ended with the initial outbreak of GI.2, which did not appear
to cause a national population decline. In contrast, we found significant variability in the rabbit
population trend among regional communities, where some increased, and others decreased. Such
a disparity is unlikely to be explained by a single factor; rather, it appears to result from several
factors, such as climatic conditions, host resistance improvement, virulence attenuation, or population
density. Our study suggests that a national comprehensive hunting bag series could aid in elucidating
the differences in the impact of emerging diseases on a large scale. Future research should focus
on national longitudinal serological studies to shed light on the immunological status of rabbit
populations in different regions to better understand the evolution of RHD strains and the resistance
gained by the wild populations.This work was supported by project LAGMED (www.lagmed.eu, accessed on 5 April 2023) through the Spanish Ministry of Science, Innovation and University (REF: PRIMAS2-11-PCI2019-103698) and the PRIMA programme, an Art.185 initiative supported and funded under Horizon 2020, the European Union’s Framework Programme for Research and Innovation and The APC was funded by project LAGMED