The Middle Eocene Climatic Optimum (MECO) event at ~40 Ma was a greenhouse warming which indicates an abrupt reversal in long-term cooling through the middle Eocene. Here, we present environmental and rock magnetic data from sedimentary successions from the Indian Ocean (ODP Hole 711A) and eastern NeoTethys (Monte Cagnero section - MCA). The high-resolution environmental magnetism record obtained for MCA section shows an interval of increase of magnetic parameters comprising the MECO peak. A relative increase in eutrophic nannofossil taxa spans the culmination of the MECO warming and its aftermath and coincides with a positive carbon isotope excursion, and a peak in magnetite and hematite/goethite concentrations. The magnetite peak reflects the appearance of magnetofossils, while the hematite/goethite apex are attributed to an enhanced detrital mineral contribution, likely related to aeolian dust transported from the continent adjacent to the Neo-Tethys Ocean during a drier, more seasonal MECO climate. Seasurface iron fertilization is inferred to have stimulated high phytoplankton productivity, increasing organic carbon export to the seafloor and promoting enhanced biomineralization of magnetotactic bacteria, which are preserved as magnetofossils during the warmest periods of the MECO event. Environmental magnetic parameters show the same behavior for ODP Hole 711A. We speculate that iron fertilization promoted by aeolian hematite during the MECO event has contributed significantly to increase the primary productivity in the oceans. The widespread occurrence of magnetofossils in other warming periods suggests a common mechanism linking climate warming and enhancement of magnetosome production and preservation