Cloning and Expression of irf7 Gene in Spotted Knifejaw (Oplegnathus punctatus) Under Virus Infection

Abstract

Interferon regulatory factor (irf7) is an immune regulatory factor that plays an important role in the antiviral process. To explore the role of irf7 in Oplegnathus punctatus (Temminck & Schlegel, 1844) under viral infection, we cloned the coding DNA sequence (CDS) region of irf7 through PCR and analyzed the expression patterns at both tissue and cell levels. The results showed that the CDS region of Opirf7 was 1 332 bp and encoded a peptide with 443 amino acids. The predicted molecular weight was 50.5 kDa and the theoretical isoelectric point was 5.546. Protein structure analysis showed that Opirf7 has three conserved domains: the DNA binding domain (DBD), IRF-associated domain (IAD), and serine-rich domain (SRD). Amino acid similarity analysis showed that OpIRF7 had the highest similarity to the IRF7 of Lates calcarifer, which was 82.92%. The similarity of Opirf7 with the IRF7 of Larimichthys crocea, Paralichthys olivaceus, and Cynoglossus semilaevis were 81.99%, 79.95%, and 73.74%, respectively. Phylogenetic analysis showed that Opirf7 and other fish irf7 genes were clustered into one branch, and irf7s from Gallus gallus, Mus musculus, Macaca mulatta, and Homo sapiens were clustered into another. Tissues from healthy O. punctatus were collected, including the liver, spleen, kidney, head kidney, intestine, gill, skin, muscle, brain, heart, and blood. After RNA extraction and cDNA synthesis, real-time PCR (qPCR) was performed to detect the expression level of Opirf7 using the comparative CT method (2−ΔΔCT method). The results of qPCR showed that Opirf7 was expressed in different tissues of healthy individuals and its expression was highest in the liver, followed by the skin and intestines. The lowest expression was observed in the head kidney. In this study, the expression profiles of Opirf7 before and after viral infection were determined at the tissue and cell levels. For the in vivo challenge study, fish were intraperitoneally injected with spotted knifejaw iridovirus, and the expression level of Opirf7 was tested in the spleen, kidney, and liver. Compared with the control group at 0 h, the expression level of Opirf7 was 15-fold in the spleen and 3-fold in the kidney 4 days after infection, and the expression peak was at 7 days after infection. However, the expression of Opirf7 was not significantly altered in the liver. A poly I: C-infected O. punctatus brain cell model was established, and the expression profiles of Opirf7 mRNA were detected before and after infection. The expression of Opirf7 mRNA in the low and medium concentration groups (50 μg/mL and 100 μg/mL, respectively) increased by 13 to 17 times, and the expression level of Opirf7 mRNA in the high concentration group (200 μg/mL) increased by approximately 8 times. It was speculated that the high concentration of 200 μg/mL caused some damage to the cells and that the expression level in the high concentration group was lower than that in the low and medium groups. In this study, the full-length open reading frame sequence of Opirf7 was cloned and characterized for the first time. The deduced amino acid sequence displayed a structure similar to those of other vertebrates. Further functional analysis showed that Opirf7 has a significant response to viral infection at both tissue and cell levels. This study demonstrated that the Opirf7 gene might play an important role in the antiviral response of O. punctatus and provide a potential molecular marker for antivirus breeding of O. punctatus