The raw and processed data that support the findings of the study entitled "Macrophage efferocytosis promotes bone formation by increasing osteoprogenitors" and authored by Dr Lena Batoon, Ms Amy Koh, Dr Susan Millard, Mr Jobanpreet Grewal, Ms Fang Ming Choo, Ms Aysia Kinnaird, Ms Megan Avey, Ms Tatyana Teslya, Dr Allison Pettit, Dr Laurie McCauley and Dr Hernan Roca.</p