CellProfiler is a widely used software for creating reproducible, reusable
image analysis workflows without needing to code. In addition to the >90
modules that make up the main CellProfiler program, CellProfiler has a plugins
system that allows for creation of new modules which integrate with other
Python tools or tools that are packaged in software containers. The
CellProfiler-plugins repository contains a number of these CellProfiler
modules, especially modules that are experimental and/or dependency-heavy.
Here, we present an upgraded CellProfiler-plugins repository with examples of
accessing containerized tools, improved documentation, and added
citation/reference tools to facilitate the use and contribution of the
community.Comment: 17 pages, 2 figures, 1 tabl