Additional file 2 of Haplotype-resolved genomes of two buckwheat crops provide insights into their contrasted rutin concentrations and reproductive systems

Abstract

Additional file 2: Fig. S11. Syntenic block dotplot within F. esculentum genome. Fig. S12. Syntenic block dotplot between F. esculentum and S. oleracea genomes. Fig. S13. Gene ontology (GO) enrichment analysis of the expanded gene families in F. tataricum. Fig. S14. GO enrichment analysis of the expanded gene families in F. esculentum. Fig. S15. Overview of the rutin biosynthetic pathway in F. tataricum and F. esculentum with expression profiles of key enzyme genes. Fig. S16. Multiple sequence alignment of the UGT2 proteins for the 4 assemblies. Red box indicates the position of UDP-glycosyltransferase functional domian (PF00201). Fig. S17. Sequence alignment of UGT2 promoter sequences in F. tataricum and F. esculentum haplotyped genomes. Fig. S18. Gene collinear relationship between F. tataricum (n=8) and F. esculentum (n=8) genomes. Red lines indicate S-RNase genes loci while blue lines indicate SLF genes loci. Fig. S19 Multiple sequence alignment of the S-RNase proteins for the 2 assemblies. Fig. S20 Sequence alignment of S-RNase promoter sequences in F. tataricum and F. esculentum genomes. Fig. S21. The number of different families within the Copia (a) and Gypsy (b) superfamilies. Fig. S22. The genome comparison between the 2 Mb to 3 Mb interval of Chromosome 8 of Fe-haplotype 1 and FES_r1.0