The present work introduces both synthesis of silica nanoparticles doped with CoII ions by means of differently modified microemulsion water-in-oil (w/o) and Stöber techniques and characterization of the hybrid nanoparticles (CoII@SiO2) by TEM, DLS, XRD, ICP-EOS, SAXS, UV-Vis, and UV-Vis/DR spectroscopy and electrochemical methods. The results reveal the lack of nanocrystalline dopants inside the hybrid nanoparticles, as well as no ligands, when CoII ions are added to the synthetic mixtures as CoII(bpy)3 complexes, thus pointing to coordination of CoII ions with Si-O- groups as main driving force of the doping. The UV-Vis/DR spectra of CoII@SiO2 in the range of d-d transitions indicate that Stöber synthesis in greater extent than the w/o one stabilizes tetrahedral CoII ions versus the octahedral ions. Both cobalt content and homogeneity of the CoII distribution within CoII@SiO2 are greatly influenced by the synthetic technique. The electrochemical behavior of CoII@SiO2 is manifested by one oxidation and two reduction steps, which provide the basis for electrochemical response on glyphosate and HP(O)(OEt)2 with the LOD = 0.1 μM and the linearity within 0.1–80 μM. The Stöber CoII@SiO2 are able to discriminate glyphosate from HP(O)(OEt)2, while the w/o nanoparticles are more efficient but nonselective sensors on the toxicants
