This research was motivated by the low of student learning outcomes that reflected from science process skills and understanding of concepts students are classified low. The purpose of this study is (1) to analyze differences in science process skills and the concepts understanding of physics among the group of students who studied with MCTL and MPK, (2) to analyze differences in science process skills and the concepts understanding of physics among students who have a FI cognitive style and FD cognitive style, (3) to analyze the influence of the interaction between the MCTL with MPK to the science process skills and the concepts understanding of physics that is viewed from students cognitive styles. This study is considered quasi-experimental design with post-test only control group design. The research sample was from student of 2nd semester in grade X SMA Negeri 1 Gianyar, academic year 2012/2013. Samples were taken by simple random sampling technique. Data collected by the test of science process skills, observation sheets and test of concepts understanding. Data were analyzed by using descriptive statistics and two way MANOVA. The results show (1) there is a difference between the science process skills and the concepts understanding of physics among the group of students who studied with MCTL and MPK (F = 24.282, p <0,05), (2) there is a difference between the science process skills and the concepts understanding of physics students who have FI cognitive style and FD cognitive style (F = 6.205, p <0.05), (3) there is an interaction effect between cognitive style and learning model for science process skills and the concepts understanding of physics students (F = 3.890, p <0.05). The implication of this research is the need for separation of students who will follow cognitive learning styles based on owned