CESTES - A global database for metaCommunity Ecology: Species, Traits, Environment and Space

Abstract

CESTES is a global database for metaCommunity Ecology: Species, Traits, Environment and Space. It compiles 80 datasets from trait-based studies. Each dataset includes four matrices: species community abundances or presences/absences across multiple sites, species trait information, environmental variables and spatial coordinates of the sampling sites. CESTES presents a harmonized structure and covers a diversity of ecosystem types (marine, terrestrial, freshwater), taxonomic groups (plants, vertebrates, invertebrates...), geographical regions, and spatial scales. The CESTES database is a live database: it will be maintained and expanded in the future as new datasets become available (https://icestes.github.io/sharedata). A zipped folder called “CESTES.zip” includes two alternative formats for the CESTES database: - a “xCESTES” folder that includes 80 Excel files (one file per dataset), each named according to the following structure: “AuthorPublicationYear.xlsx” - a “rCESTES” folder that includes the CESTES core processed database (comm, traits, envir, coord matrices) as an R list object “CESTES.RData” plus two R scripts, and two metadata tables for data processing and exploration. This “CESTES.zip” folder also includes: - an extended metadata table, “CESTES_metadata.xlsx”, that provides the general metadata information of all the datasets, - a tutorial document, “HOW_TO_SHARE_MY_DATA_FOR_CESTES.pdf”, that explains how to share data for integrating future datasets in the database. A second zipped folder, called "ceste.zip", corresponds to the non-spatial ancillary to CESTES. We provide access to 10 additional datasets that were not completely suitable for the CESTES database, due to the absence of spatial information or insufficient metadata but that were potentially valuable for their three other data matrices (comm, traits, envir). They follow the same structure as CESTES, except that they do not present the “coord” sheet and sometimes include only partial metadata. The “ceste.zip” zipped folder includes the 10 data files + 1 metadata file called "ceste_metadata.xlsx"