Genetic diversity among farmer-preferred cassava landraces in Uganda

Abstract

Understanding of genetic diversity among a breeding population is an important requirement for crop improvement as it allows for the selection of diverse parental combinations and formation of heterotic pools for genetic gain. This study was carried out to determine genetic diversity within and among 51 farmer-preferred cassava ( Manihot esculenta ) landraces and 15 elite accessions grown in Uganda. Twenty six simple sequence repeat (SSR) markers used for genetic diversity assessment in this study revealed a total of 154 alleles, of which 24% were unique alleles present only in landraces. The genetic diversity and observed herozygosity in landraces were slightly higher than in elite accessions. Elite accessions clustered with some of the landraces indicating that there were some alleles in common. However, 58.8% of the landraces fell into 3 different clusters independent of the elite accessions. Including these landraces with unique alleles in cassava breeding schemes will increase the chances of producing farmer preferred adapted elite cultivars. The study also revealed genetic differentiation among accessions from different regions providing an opportunity for establishment of heterotic pools within a breeding programme.La compr\ue9hension de la diversit\ue9 g\ue9n\ue9tique est une condition importante dans la s\ue9lection de diverses combinaisons parentales et la formation des groupes h\ue9terotiques d\u2019int\ue9r\ueat g\ue9n\ue9tique pour l\u2019am\ue9lioration des cultures. Cette \ue9tude \ue9tait conduite pour d\ue9terminer la diversit\ue9 g\ue9n\ue9tique parmi 51 vari\ue9t\ue9s locales de manioc ( Manihot esculenta ) pr\ue9f\ue9r\ue9es des fermiers et 15 accessions \ue9lites cultiv\ue9es en Ouganda. Vingt six marqueurs simples \ue0 sequence r\ue9p\ue9t\ue9e (SSR) utilis\ue9s pour l\u2019\ue9valuation de la diversit\ue9 g\ue9n\ue9tique ont r\ue9v\ue9l\ue9 un total de 154 all\ue8les, parmi lesquelles 24% \ue9taient des all\ue8les uniques pr\ue9sentes dans les races locales seulement. La diversit\ue9 g\ue9n\ue9tique et l\u2019h\ue9terozygosit\ue9 observ\ue9es dans les races locales \ue9taient l\ue9g\ue8rement sup\ue9rieures que dans les accessions \ue9lites. Celles-ci s\u2019\ue9taient regroup\ue9es avec quelques vari\ue9t\ue9s locales indiquant donc qu\u2019elles avaient quelques all\ue8les en commun. Par ailleurs, 58.8% des races locales ont form\ue9 trois diff\ue9rents groupes ind\ue9pendamment des accessions \ue9lites. Inclure ces races locales \ue0 all\ue8les uniques dans les syst\ue8mes d\u2019am\ue9lioration du manioc permettra d\u2019augmenter les chances de produire des cultivars \ue9lites pr\ue9f\ue9r\ue9s des fermiers. L\u2019\ue9tude montre aussi que la diff\ue9renciation g\ue9n\ue9tique trouv\ue9e parmi les accessions de diff\ue9rentes r\ue9gions est une opportunit\ue9 offerte pour l\u2019\ue9tablissement des groupes h\ue9terotiques dans le programme d\u2019am\ue9lioration