Background: In many research disciplines, ordered lists are compared. One example is to compare a subset of all
significant genes or proteins in a primary study to those in a replication study. Often, the top of the lists are compared
using Venn diagrams, ore more precisely Euler diagrams (set diagrams showing logical relations between a finite
collection of different sets). If different cohort sizes, different techniques or algorithms for evaluation were applied, a
direct comparison of significant genes with a fixed threshold can however be misleading and approaches comparing
lists would be more appropriate.
Results: We developed DynaVenn, a web-based tool that incrementally creates all possible subsets from two or three
ordered lists and computes for each combination a p-value for the overlap. Respectively, dynamic Venn diagrams are
generated as graphical representations. Additionally an animation is generated showing how the most significant
overlap is reached by backtracking. We demonstrate the improved performance of DynaVenn over an arbitrary cut-off
approach on an Alzheimer’s Disease biomarker set.
Conclusion: DynaVenn combines the calculation of the most significant overlap of different cohorts with an intuitive
visualization of the results. It is freely available as a web service at http://www.ccb.uni-saarland.de/dynavenn