Uapaca kirkiana is a priority fruit tree species for domestication in miombo woodlands of Southern Africa. Natural populations of U. kirkiana are declining through out the woodlands due to deforestation, forest fragmentation and wildfires. Knowledge of population structure and genetic diversity is prerequisite for development of conservation strategies. Amplified fragment length polymorphisms (AFLP) were used to assess the genetic diversity of eight populations from three geographical regionsof Malawi. AFLP markers revealed moderate differentiation (GST =0.079) among the populations collected from the three regions, however, there were no significant genetic variations among the regional collections. Analyses of molecular variance (AMOVA) found very high variation (92%) among individuals within populations and 6.8% among populations. The variations between populations indicate that populations can not be considered a single panmictic unit. Analyses of genetic similaritybased on unweighted pair group method of arithmetic averages (UPGMA) suggested that the 8 populations fall into three clusters with 5 populations in one cluster, two in another and the lake shore population of Chesamu in its own cluster. Based on results presented it would be cost effective tosample a small number of populations represented by a large number of individuals for germplasm conservation purposes. In view of the wide distribution of U. kirkiana in the miombo woodlands in Southern Africa there is need for a more intensive genetic study to include populations growing in different countries to produce a wider picture of levels of distribution of genetic diversity of the specie
