In the first work of this series [physics/0204035] it was shown that the
conformational space of a molecule could be described to a fair degree of
accuracy by means of a central hyperplane arrangement. The hyperplanes divide
the espace into a hierarchical set of cells that can be encoded by the face
lattice poset of the arrangement. The model however, lacked explicit rotational
symmetry which made impossible to distinguish rotated structures in
conformational space. This problem was solved in a second work
[physics/0404052] by sorting the elementary 3D components of the molecular
system into a set of morphological classes that can be properly oriented in a
standard 3D reference frame. This also made possible to find a solution to the
problem that is being adressed in the present work: for a molecular system
immersed in a heat bath we want to enumerate the subset of cells in
conformational space that are visited by the molecule in its thermal wandering.
If each visited cell is a vertex on a graph with edges to the adjacent cells,
here it is explained how such graph can be built