We derive the fermion bilinear terms in the world volume action for a D3
brane in the presence of background flux. In six-dimensional compactifications
non-perturbative corrections to the superpotential can arise from an Euclidean
D3-brane instanton wrapping a divisor in the internal space. The bilinear terms
give rise to fermion masses and are important in determining these corrections.
We find that the three-form flux generically breaks a U(1) subgroup of the
structure group of the normal bundle of the divisor. In an example of
compactification on T^6/Z_2, six of the sixteen zero modes originally present
are lifted by the flux.Comment: Important factor of ``i'' was overlooked in Euclidean continuation of
WZ term. This changes the count of zero-modes in the T^6/Z_2 example. Main
result stays unchanged. We thank Bergshoeff, Kallosh, Kashani-Poor, Sorokin
and Tomasiello for pointing this ou