Abstract. Using a Penning trap single ion mass spectrometer, our group has measured the atomic masses of 14 isotopes with a fractional accuracy of about 10 −10 . The masses were extracted from 28 cyclotron frequency ratios of two ions altenately confined in our trap. The precision on these measurements was limited by the temporal fluctuations of our magnetic field during the 5-10 minutes required to switch from one ion to the other. By trapping two different ions in the same Penning trap at the same time, we can now simultaneously measure their two cyclotron frequencies and extract the ratio with a precision of about 10 −11 in only a few hours. We have developed novel techniques to measure and control the motion of the two ions in the trap and we are currently using these tools to carefully investigate the important question of systematic errors in those measurements. Overview Accuracy in mass spectrometry has been advanced over two orders of magnitude by the use of resonance techniques to compare the cyclotron frequencies of single trapped ions. This paper provides an overview of the MIT Penning trap apparatus, techniques and measurements. We begin by describing the various interesting applications of our mass measurements and the wide-ranging impact they have on both fundamental physics and metrology. In the same section, we also describe further scientific applications that an improved accuracy would open. This serves as a motivation for our most current work (described in Sect. 4) to increase our precision by about an order of magnitude. Before describing the latest results, we give in Sect. 3 an overview of our apparatus and methods, with special emphasis on the techniques which we have developed for making measurements with accuracy around 10 −10 . In those measurements, we alternately trapped two different ions (one at the time) and compared their cyclotron frequencies to obtain their mass ratio. The main limitation of this method was the fact that our stable magnetic field would typically fluctuate by several parts in 10 10 during the 5-10 minutes required to switch from one ion to the other. In order to eliminate this problem, we now confine both ions simultaneously in our Penning trap. In Sect. 4, we describe the various techniques that have allowed us to load a pair in the trap and demonstrate a significant gain in precision from simultaneously measuring both their cyclotron frequencies. New tools to measure and control the motion of the ions are also presented. Those tools are invaluable in our current investigation of the important questio