Abstract Using computer analysis and modeling we studied NodD transcription factor which controls expression of nodulation genes of symbiotic nitrogen-fixing bacteria. On the basis of the amino acid sequences it was predicted that in the secondary structure of NodD protein it must be present ten alpha helices and three beta sheets which form two do mains after folding. Since NodD acts in oligo meric mode, it was analy zed all four known for other similar factors of transcription ways of assembly into dime rs. Using molecular docking the probable mechanism o f NodD act ivation by binding of low molecular weight inducer (on the model o f luteolin) was clarified
