39,103 research outputs found
Ecosystem Shock: The Devastating Impacts of Invasive Species on the Great Lakes Food Web
Gives an account of the changes to the Great Lakes ecosystem brought about by non-native aquatic species. Assesses the current and future impacts on fish communities and commercial fisheries. Provides policy and research recommendations
Sympatric Dreissena species in the Meuse River : towards a dominance shift from zebra to quagga mussels
The rapid spread of the quagga mussel, Dreissena rostriformis, in Western Europe is of particular concern since the species is known to have serious ecological and economic impacts, similar to those of the well-established zebra mussel, Dreissena polymorpha. This study aimed (1) to provide an update on the quagga mussel distribution in several Belgian inland waterways, and (2) to check if a shift in dominance between Dreissena species is occurring. Using density measurements and artificial substrate samplers, we compared population dynamics for both species at different time-points based on size-frequency distribution. Our results show that quagga mussels are spreading rapidly throughout Belgium via a number of possible invasion fronts based around large rivers and canals. The quagga mussel became the dominant dreissenid species in both the Meuse River and a number of Belgian canals. In just three years, quagga mussel’s relative abundance increased from 2.9% (±2.9) to 52.6% (±43.1) of the total dreissenid population in the Meuse River. The most rapid increase in abundance has occurred in the Albert Canal, where quagga mussels achieved a mean relative abundance of 80% two years after the first observation. In the Meuse River, the quagga mussel displays a faster growth rate and/or earlier reproduction than the zebra mussel. We discuss different mechanisms that could explain the quagga mussel’s apparent competitive advantage over the zebra mussel
Species abundance and distribution of mbuna in Lake Malawi National Park and other areas of Lake Malawi
Bioinvasions: Breaching Natural Barriers
This Washington Sea Grant print publication, now posted on the web, is a good introduction to the history and science of bioinvasions. Provides definitions of native and non-native organisms, identifies introduced species, the pathways and characteristics of bioinvasions, and the habitat alterations that facilitate them. Case studies include the zebra mussel and green crab. Offers suggestions for how individuals can help and describes policy responses to aquatic introductions. Downloadable as a PDF file. Educational levels: Middle school, High school
An assessment of two decades of contaminant monitoring in the Nation’s Coastal Zone.
Executive Summary:
Information found in this report covers the years 1986 through 2005. Mussel Watch began monitoring a suite of trace metals and organic contaminants such as DDT, PCBs and PAHs. Through time additional chemicals were added, and today approximately 140 analytes are monitored. The Mussel Watch Program is the longest running estuarine and coastal pollutant monitoring effort conducted in the United States that is national in scope each year. Hundreds of scientific journal articles and technical reports based on Mussel Watch data have been written; however, this report is the first that presents local, regional and national findings
across all years in a Quick Reference format, suitable for use by policy makers, scientists, resource managers and the general public.
Pollution often starts at the local scale where high concentrations point to a specific source of contamination, yet some contaminants such as PCBs are atmospherically transported across regional and national scales, resulting in contamination far from their origin. Findings presented here showed few national trends for trace metals and decreasing trends for most organic contaminants; however, a wide variety of trends, both increasing and decreasing, emerge at regional and local levels. For most organic contaminants, trends have resulted from state and
federal regulation. The highest concentrations for both metal and organic contaminants are found near urban and industrial areas.
In addition to monitoring throughout the nation’s coastal shores and Great Lakes, Mussel Watch samples are stored in a specimen bank so that trends can be determined retrospectively for new and emerging contaminants of
concern. For example, there is heightened awareness of a group of flame retardants that are finding their way into the marine environment. These compounds, known as polybrominated diphenyl ethers (PBDEs), are now being studied using historic samples from the specimen bank and current samples to determine their spatial distribution. We will continue to use this kind of investigation to assess new contaminant threats.
We hope you find this document to be valuable, and that
you continue to look towards the Mussel Watch Program
for information on the condition of your coastal waters. (PDF contains 118 pages
The genetic equidistance result of molecular evolution is independent of mutation rates
The well-established genetic equidistance result shows that sister species are approximately equidistant to a simpler outgroup as measured by DNA or protein dissimilarity. The equidistance result is the most direct evidence, and remains the only evidence, for the constant mutation rate interpretation of this result, known as the molecular clock. However, data independent of the equidistance result have steadily accumulated in recent years that often violate a constant mutation rate. Many have automatically inferred non-equidistance whenever a non-constant mutation rate was observed, based on the unproven assumption that the equidistance result is an outcome of constant mutation rate. Here it is shown that the equidistance result remains valid even when different species can be independently shown to have different mutation rates. A random sampling of 50 proteins shows that nearly all proteins display the equidistance result despite the fact that many proteins have non-constant mutation rates. Therefore, the genetic equidistance result does not necessarily mean a constant mutation rate. Observations of different mutation rates do not invalidate the genetic equidistance result. New ideas are needed to explain the genetic equidistance result that must grant different mutation rates to different species and must be independently testable
Monitoring of Single-Cell Responses in the Optic Tectum of Adult Zebrafish with Dextran-Coupled Calcium Dyes Delivered via Local Electroporation
Kassing V, Engelmann J, Kurtz R. Monitoring of Single-Cell Responses in the Optic Tectum of Adult Zebrafish with Dextran-Coupled Calcium Dyes Delivered via Local Electroporation. PLoS ONE. 2013;8(5): e62846.The zebrafish (Danio rerio) has become one of the major animal models for in vivo examination of sensory and neuronal computation. Similar to Xenopus tadpoles neural activity in the optic tectum, the major region controlling visually guided behavior, can be examined in zebrafish larvae by optical imaging. Prerequisites of these approaches are usually the transparency of larvae up to a certain age and the use of two-photon microscopy. This principle of fluorescence excitation was necessary to suppress crosstalk between signals from individual neurons, which is a critical issue when using membrane-permeant dyes. This makes the equipment to study neuronal processing costly and limits the approach to the study of larvae. Thus there is lack of knowledge about the properties of neurons in the optic tectum of adult animals. We established a procedure to circumvent these problems, enabling in vivo calcium imaging in the optic tectum of adult zebrafish. Following local application of dextran-coupled dyes single-neuron activity of adult zebrafish can be monitored with conventional widefield microscopy, because dye labeling remains restricted to tens of neurons or less. Among the neurons characterized with our technique we found neurons that were selective for a certain pattern orientation as well as neurons that responded in a direction-selective way to visual motion. These findings are consistent with previous studies and indicate that the functional integrity of neuronal circuits in the optic tectum of adult zebrafish is preserved with our staining technique. Overall, our protocol for in vivo calcium imaging provides a useful approach to monitor visual responses of individual neurons in the optic tectum of adult zebrafish even when only widefield microscopy is available. This approach will help to obtain valuable insight into the principles of visual computation in adult vertebrates and thus complement previous work on developing visual circuits
Zebra Fish Lacking Adaptive Immunity Acquire an Antiviral Alert State Characterized by Upregulated Gene Expression of Apoptosis, Multigene Families, and Interferon-Related Genes
16 páginas, 5 figuras, 4 tablas.-- Pablo García-Valtanen et al.--This is an open-access article distributed under the terms of the Creative Commons
Attribution License (CC BY)To investigate fish innate immunity, we have conducted organ and cell immune-related
transcriptomic as well as immunohistologic analysis in mutant zebra fish (Danio rerio)
lacking adaptive immunity (rag1−/−) at different developmental stages (egg, larvae, and
adult), before and after infection with spring viremia carp virus (SVCV). The results revealed
that, compared to immunocompetent zebra fish (rag1+/+), rag1−/− acquired increased
resistance to SVCV with age, correlating with elevated transcript levels of immune genes
in skin/fins and lymphoid organs (head kidney and spleen). Gene sets corresponding
to apoptotic functions, immune-related multigene families, and interferon-related genes
were constitutively upregulated in uninfected adult rag1−/− zebra fish. Overexpression of
activated CASPASE-3 in different tissues before and after infection with SVCV further
confirmed increased apoptotic function in rag1−/− zebra fish. Concurrently, staining of different
tissue samples with a pan-leukocyte antibody marker showed abundant leukocyte
infiltrations in SVCV-infected rag1−/− fish, coinciding with increased transcript expression
of genes related to NK-cells and macrophages, suggesting that these genes played a
key role in the enhanced immune response of rag1−/− zebra fish to SVCV lethal infection.
Overall, we present evidence that indicates that rag1−/− zebra fish acquire an antiviral
alert state while they reach adulthood in the absence of adaptive immunity. This antiviral
state was characterized by (i) a more rapid response to viral infection, which resulted in
increased survival, (ii) the involvement of NK-cell- and macrophage-mediated transcript
responses rather than B- and/or T-cell dependent cells, and (iii) enhanced apoptosis,
described here for the first time, as well as the similar modulation of multigene family/
interferon-related genes previously associated to fish that survived lethal viral infections.
From this and other studies, it might be concluded that some of the characteristics of
mammalian trained immunity are present in lower vertebratesThis work
was supported by INIA project RTA2013-00008-00-00, CICYT project AGL2014-51773-C3, AGL2014-53190 REDC, BIO2011-
23400, and BIO2014-52655-R of the Ministerio de Economía y
Competitividad of Spain.Peer reviewe
Expression of Zebra Fish Aromatase cyp19a and cyp19b Genes in Response to the Ligands of Estrogen Receptor and Aryl Hydrocarbon Receptor
Many endocrine-disrupting chemicals act via estrogen receptor (ER) or aryl hydrocarbon receptor (AhR). To investigate the interference between ER and AhR, we studied the effects of 17β-estradiol (E2) and 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD) on the expression of zebra fish cyp19a (zfcyp19a) and cyp19b (zfcyp19b) genes, encoding aromatase P450, an important steroidogenic enzyme. In vivo (mRNA quantification in exposed zebra fish larvae) and in vitro (activity of zfcyp19-luciferase reporter genes in cell cultures in response to chemicals and zebra fish transcription factors) assays were used. None of the treatments affected zfcyp19a, excluding the slight upregulation by E2 observed in vitro. Strong upregulation of zfcyp19b by E2 in both assays was downregulated by TCDD. This effect could be rescued by the addition of an AhR antagonist. Antiestrogenic effect of TCDD on the zfcyp19b expression in the brain was also observed on the protein level, assessed by immunohistochemistry. TCDD alone did not affect zfcyp19b expression in vivo or promoter activity in the presence of zebra fish AhR2 and AhR nuclear translocator 2b (ARNT2b) in vitro. However, in the presence of zebra fish ERα, AhR2, and ARNT2b, TCDD led to a slight upregulation of promoter activity, which was eliminated by either an ER or AhR antagonist. Studies with mutated reporter gene constructs indicated that both mechanisms of TCDD action in vitro were independent of dioxin-responsive elements (DREs) predicted in the promoter. This study shows the usefulness of in vivo zebra fish larvae and in vitro zfcyp19b reporter gene assays for evaluation of estrogenic chemical actions, provides data on the functionality of DREs predicted in zfcyp19 promoters and shows the effects of cross talk between ER and AhR on zfcyp19b expression. The antiestrogenic effect of TCDD demonstrated raises further concerns about the neuroendocrine effects of AhR ligand
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