Post-processing partitions to identify domains of modularity optimization

We introduce the Convex Hull of Admissible Modularity Partitions (CHAMP) algorithm to prune and prioritize different network community structures identified across multiple runs of possibly various computational heuristics. Given a set of partitions, CHAMP identifies the domain of modularity optimization for each partition ---i.e., the parameter-space domain where it has the largest modularity relative to the input set---discarding partitions with empty domains to obtain the subset of partitions that are "admissible" candidate community structures that remain potentially optimal over indicated parameter domains. Importantly, CHAMP can be used for multi-dimensional parameter spaces, such as those for multilayer networks where one includes a resolution parameter and interlayer coupling. Using the results from CHAMP, a user can more appropriately select robust community structures by observing the sizes of domains of optimization and the pairwise comparisons between partitions in the admissible subset. We demonstrate the utility of CHAMP with several example networks. In these examples, CHAMP focuses attention onto pruned subsets of admissible partitions that are 20-to-1785 times smaller than the sets of unique partitions obtained by community detection heuristics that were input into CHAMP.Comment: http://www.mdpi.com/1999-4893/10/3/9

Antibacterial activity of gelatin/copper (II)-exchanged montmorillonite films

Cu (II) - exchanged montmorillonite (Cu2+MMt) was prepared, characterized and introduced into a bovine gelatin (Ge) matrix via a dissolution-intercalation method to get antibacterial nanocomposite films. The maximum amount of exchanged cation did not exceed the cation exchange capacity of the pristine montmorillonite (Na+MMt), as assessed by energy dispersive X-ray (EDX) spectroscopy. Cu2+MMt showed antibacterial activity in vitro against Escherichia coli O157:H7 (Gram-negative) and Listeria monocytogenes (Gram-positive) as revealed by the agar disc-diffusion assay. The dispersion of clays in Ge films was monitored by X-ray diffraction (XRD) and Scanning Electron Microscopy (SEM). Blending gelatin with 5% w/w of clay increased the tensile strength of the nanocomposite films in around 280% while the elongation at break and the water vapor permeability decreased in about 42 and 30%, respectively, regardless of the cation in clay. The Ge/Cu2+MMt film exhibited antibacterial effectiveness against both pathogens tested under the same conditions, demonstrating a stronger effect on L. monocytogenes than on E. coli O157:H7, since the cell wall of the latter differs significantly and such difference could influence their vulnerability and response to the active films. Therefore, the incorporation of low clay levels as a vehicle for copper ions into gelatin matrix has demonstrated to be a good method for developing functional materials that can be potentially applied to the design of food contact items.Fil: Martucci, Josefa Fabiana. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Mar del Plata. Instituto de Investigaciones en Ciencia y Tecnología de Materiales. Universidad Nacional de Mar del Plata. Facultad de Ingeniería. Instituto de Investigaciones en Ciencia y Tecnología de Materiales; ArgentinaFil: Ruseckaite, Roxana Alejandra. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Mar del Plata. Instituto de Investigaciones en Ciencia y Tecnología de Materiales. Universidad Nacional de Mar del Plata. Facultad de Ingeniería. Instituto de Investigaciones en Ciencia y Tecnología de Materiales; Argentin

Digital Holographic Microscopy of Phase Separation in Multicomponent Lipid Membranes

Lateral in-homogeneities in lipid compositions cause microdomains formation and change in the physical properties of biological membranes. With the presence of cholesterol and mixed species of lipids, phospholipid membranes segregate into lateral domains of liquid-ordered and liquid-disordered phases. Coupling of two-dimensional intralayer phase separations and interlayer liquid-crystalline ordering in multicomponent membranes has been previously demonstrated. By the use of digital holographic microscopy (DHMicroscopy), we quantitatively analyzed the volumetric dynamical behavior of such membranes. The specimens are lipid mixtures composed of sphingomyelin, cholesterol, and unsaturated phospholipid, 1,2-dioleoyl-sn-glycero-3-phosphocholine. DHMicroscopy in a transmission mode is an effective tool for quantitative visualization of phase objects. By deriving the associated phase changes, three-dimensional information on the morphology variation of lipid stacks at arbitrary time scales is obtained. Moreover, the thickness distribution of the object at demanded axial planes can be obtained by numerical focusing. Our results show that the volume evolution of lipid domains follows approximately the same universal growth law of previously reported area evolution. However, the thickness of the domains does not alter significantly by time; therefore, the volume evolution is mostly attributed to the changes in area dynamics. These results might be useful in the field of membrane-based functional materials

Neural Stem Cell Spreading on Lipid Based Artificial Cell Surfaces, Characterized by Combined X-ray and Neutron Reflectometry

We developed a bioadhesive coating based on a synthetic peptide-conjugate (AK-cycloRGDfC]) which contains multiples of the arginyl-glycyl-aspartic acid (RGD) amino acid sequence. Biotinylated AK-cycloRGDfC] is bound to a supported lipid bilayer via a streptavidin interlayer. Layering, hydration and packing of the coating is quantified by X-ray and neutron reflectometry experiments. AK-cycloRGDfC] binds to the streptavidin interlayer in a stretched-out on edge configuration. The highly packed configuration with only 12% water content maximizes the number of accessible adhesion sites. Enhanced cell spreading of neural stem cells was observed for AK-cycloRGDfC] functionalized bilayers. Due to the large variety of surfaces which can be coated by physisorption of lipid bilayers, this approach is of general interest for the fabrication of biocompatible surfaces

Intrinsic energy conversion mechanism via telescopic extension and retraction of concentric carbon nanotubes

The conversion of other forms of energy into mechanical work through the geometrical extension and retraction of nanomaterials has a wide variety of potential applications, including for mimicking biomotors. Here, using molecular dynamic simulations, we demonstrate that there exists an intrinsic energy conversion mechanism between thermal energy and mechanical work in the telescopic motions of double-walled carbon nanotubes (DWCNTs). A DWCNT can inherently convert heat into mechanical work in its telescopic extension process, while convert mechanical energy into heat in its telescopic retraction process. These two processes are thermodynamically reversible. The underlying mechanism for this reversibility is that the entropy changes with the telescopic overlapping length of concentric individual tubes. We find also that the entropy effect enlarges with the decreasing intertube space of DWCNTs. As a result, the spontaneously telescopic motion of a condensed DWCNT can be switched to extrusion by rising the system temperature above a critical value. These findings are important for fundamentally understanding the mechanical behavior of concentric nanotubes, and may have general implications in the application of DWCNTs as linear motors in nanodevices

Bio-adhesives from soy protein concentrate and montmorillonite: Rheological and thermal behaviour

The incorporation of different amounts of montmorillonite (MMT) to soy protein concentrate (SPC) was used to improve the performance of the bio-nano-adhesive obtained. X-Ray diffraction, rheology, thermogravimetric analysis and scanning electronic microscopy were carried out to characterize the adhesives, and dry and wet strength was used to determine the adhesion strength. In the rheological measurement, the incorporation of up to 3 wt% of MMT did not modify the consistency index values of the SPC, while an increase in the flow consistency index for higher concentrations can be observed due to a strong interaction between MMT and the protein. Besides, the flow point values increase four times with respect to the value obtained for SPC alone. The decomposition temperature of SPC increases with the addition of MMT, which provides a tortuous pathway that obstructs the diffusion of volatile products out of the bio-nano-adhesive. Further addition beyond 5 wt% led to the formation of agglomerates, as verified by SEM. Moreover, the roughness of the fractured surface of the matrix can explain the decrease of the net adhesion of the nano-particles to the SPC suspensions.Fil: Bacigalupe, Alejandro. Instituto Nacional de Tecnología Industrial. Instituto Nacional de Tecnología Industrial - Caucho; Argentina. Universidad Nacional de San Martín. Instituto de Investigación e Ingeniería Ambiental; ArgentinaFil: Fernández Solarte, Alejandra María. Provincia de Buenos Aires. Gobernación. Comisión de Investigaciones Científicas. Centro de Tecnología de Recursos Minerales y Cerámica. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - La Plata. Centro de Tecnología de Recursos Minerales y Cerámica; ArgentinaFil: Fernandez, Mariela Alejandra. Provincia de Buenos Aires. Gobernación. Comisión de Investigaciones Científicas. Centro de Tecnología de Recursos Minerales y Cerámica. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - La Plata. Centro de Tecnología de Recursos Minerales y Cerámica; ArgentinaFil: Torres Sanchez, Rosa Maria. Provincia de Buenos Aires. Gobernación. Comisión de Investigaciones Científicas. Centro de Tecnología de Recursos Minerales y Cerámica. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - La Plata. Centro de Tecnología de Recursos Minerales y Cerámica; ArgentinaFil: Eisenberg, Patricia. Universidad Nacional de San Martín. Instituto de Investigación e Ingeniería Ambiental; Argentina. Instituto Nacional de Tecnología Industrial. Centro de Plástico; ArgentinaFil: Escobar, Mariano Martin. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina. Instituto Nacional de Tecnología Industrial. Instituto Nacional de Tecnología Industrial - Caucho; Argentin

Conditions for extreme sensitivity of protein diffusion in membranes to cell environments

We study protein diffusion in multicomponent lipid membranes close to a rigid substrate separated by a layer of viscous fluid. The large-distance, long-time asymptotics for Brownian motion are calculated using a nonlinear stochastic Navier-Stokes equation including the effect of friction with the substrate. The advective nonlinearity, neglected in previous treatments, gives only a small correction to the renormalized viscosity and diffusion coefficient at room temperature. We find, however, that in realistic multicomponent lipid mixtures, close to a critical point for phase separation, protein diffusion acquires a strong power-law dependence on temperature and the distance to the substrate $H$, making it much more sensitive to cell environment, unlike the logarithmic dependence on $H$ and very small thermal correction away from the critical point.Comment: 19 pages, 4 figure

The future of biosensors

Since the development of the glucose sensor by Clark and Lyons in 1962, generally recognized as the first biosensor, many types of sensors have been developed in which a physical or chemical transducer is provided with a layer containing a biological sensing element. The resulting device is called a biosensor, aimed to produce an electronic signal as a function of the concentration of a chemical or biochemical constituent of a liquid, not necessarily of biological origin. Among the many proposed concepts, the integration of biologically active materials with a silicon chip is one of the most intriguing approaches, because it seems the most comprehensive integration between biology and electronics. In this paper the resulting biochips, mainly based on the field-effect principle as the coupling mechanism between the two domains, will be described and discussed with an outlook on the future