R Package distrMod: S4 Classes and Methods for Probability Models

Package distrMod provides an object oriented (more specifically S4-style) implementation of probability models. Moreover, it contains functions and methods to compute minimum criterion estimators - in particular, maximum likelihood and minimum distance estimators.

Ordering dominant markers in F2 populations

Ordering dominant markers in F2 populations is considered a difficult problem. The difficulties arise from the fact that recombinations cannot be observed directly from the data. In general, the multi-point maximum likelihood would be the appropriate criterion for ordering markers. This criterion takes into account all available information present in marker data. However, calculation of multi-point maximum likelihoods is very time-demanding, especially if the number of markers is large. In this paper, ordering markers by minimising the number of recombinations between adjacent markers is used as a simple alternative to multi-point maximum likelihood. Contrary to multi-point maximum likelihood, this method does not involve any probability assumptions about the occurrence of recombination events. Simulated data indicate that the minimum number of recombinations between adjacent markers is approximately a linear function of the map length obtained by multi-point maximum likelihood. As a consequence, it will lead to more or less the same optimum marker orders. Optimisation of marker orders with regard to the number of recombinations between adjacent markers is carried out by a modified form of simulated annealing. The reliability of the resulting marker orders is studied by generating marker orders that are plausible with the data using a Metropolis algorith

Generalized detector as a spectrum sensor in cognitive radio networks

The implementation of the generalized detector (GD) in cognitive radio (CR) systems allows us to improve the spectrum sensing performance in comparison with employment of the conventional detectors. We analyze the spectrum sensing performance for the uncorrelated and spatially correlated receive antenna array elements. Addi¬tionally, we consider a practical case when the noise power at the output of GD linear systems (the preliminary and additional filters) is differed by value. The choice of the optimal GD threshold based on the minimum total error rate criterion is also discussed. Simulation results demonstrate superiority of GD implementation in CR sys¬tem as spectrum sensor in comparison with the energy detector (ED), weighted ED (WED), maximum-minimum eigenvalue (MME) detector, and generalized likelihood ratio test (GLRT) detecto