A Modular Semantic Annotation Framework: CellML Metadata Specifications 2.0

In the last decade or so, model encoding efforts such as CellML and SBML have greatly facilitated model availability. But, as the complexity of models increases, the utility of these models can vary. The addition of semantic information is crucial to transforming mathematical models from esoteric to informative resources. 

We have developed a metadata specification framework to better enable the annotation of CellML models with metadata. The framework consists of a core specification describing, in general terms, how annotations should be attached using RDF/XML, and satellite specifications covering several domains of immediate interest, using elements from the Dublin Core, FOAF (Friend-Of-A-Friend), BIBO (Bibliographic Ontology), MIRIAM URNs and Biomodels Qualifiers.

We also describe what we see as several emerging challenges in the field, uncovered during the application of this annotation scheme to mathematical models

Going from A to B : the safety of incompatible group A plasma for emergency release in trauma and massive transfusion patients

Peer Reviewedhttp://deepblue.lib.umich.edu/bitstream/2027.42/108097/1/trf12730.pd

Enhancement of laser cooling by the use of magnetic gradients

We present a laser cooling scheme for trapped ions and atoms using a combination of laser couplings and a magnetic gradient field. In a Schrieffer-Wolff transformed picture, this setup cancels the carrier and blue sideband terms completely resulting in an improved cooling behaviour compared to standard cooling schemes (e.g. sideband cooling) and allowing cooling to the vibrational ground state. A condition for optimal cooling rates is presented and the cooling behaviour for different Lamb-Dicke parameters and spontaneous decay rates is discussed. Cooling rates of one order of magnitude less than the trapping frequency are achieved using the new cooling method. Furthermore the scheme turns out to be robust under deviations from the optimal parameters and moreover provides good cooling rates also in the multi particle case.Comment: 14 pages, 8 figure

Efficient sympathetic motional ground-state cooling of a molecular ion

Cold molecular ions are promising candidates in various fields ranging from precision spectroscopy and test of fundamental physics to ultra-cold chemistry. Control of internal and external degrees of freedom is a prerequisite for many of these applications. Motional ground state cooling represents the starting point for quantum logic-assisted internal state preparation, detection, and spectroscopy protocols. Robust and fast cooling is crucial to maximize the fraction of time available for the actual experiment. We optimize the cooling rate of ground state cooling schemes for single $^{25}\mathrm{Mg}^{+}$ ions and sympathetic ground state cooling of $^{24}\mathrm{MgH}^{+}$. In particular, we show that robust cooling is achieved by combining pulsed Raman sideband cooling with continuous quench cooling. Furthermore, we experimentally demonstrate an efficient strategy for ground state cooling outside the Lamb-Dicke regime.Comment: 11 pages, 11 figure

Curved film cooling admission tube

Effective film cooling to protect a wall surface from a hot fluid which impinges on or flows along the surface is provided. A film of cooling fluid having increased area is provided by changing the direction of a stream of cooling fluid through an angle of from 135 deg. to 165 deg. before injecting it through the wall into the hot flowing gas. The 1, cooling fluid is injected from an orifice through a wall into a hot flowing gas at an angle to form a cooling fluid film. Cooling fluid is supplied to the orifice from a cooling fluid source via a turbulence control passageway having a curved portion between two straight portions. The angle through which the direction of the cooling fluid is turned results in less mixing of the cooling fluid with the hot gas, thereby substantially increasing the length of the film in a downstream direction

A rate equation approach to cavity mediated laser cooling

The cooling rate for cavity mediated laser cooling scales as the Lamb-Dicke parameter eta squared. A proper analysis of the cooling process hence needs to take terms up to eta^2 in the system dynamics into account. In this paper, we present such an analysis for a standard scenario of cavity mediated laser cooling with eta << 1. Our results confirm that there are many similarities between ordinary and cavity mediated laser cooling. However, for a weakly confined particle inside a strongly coupled cavity, which is the most interesting case for the cooling of molecules, numerical results indicate that even more detailed calculations are needed to model the cooling process accurately.Comment: 15 pages, 10 figures, minor corrections, PRA (in press

Cooling-rate effects in a model of (ideal?) glass

Using Monte Carlo simulations we study cooling-rate effects in a three-dimensional Ising model with four-spin interaction. During coarsening, this model develops growing energy barriers which at low temperature lead to very slow dynamics. We show that the characteristic zero-temperature length increases very slowly with the inverse cooling rate, similarly to the behaviour of ordinary glasses. For computationally accessible cooling rates the model undergoes an ideal glassy transition, i.e., the glassy transition for very small cooling rate coincides a thermodynamic singularity. We also study cooling of this model with a certain fraction of spins fixed. Due to such heterogeneous crystalization seeds the final state strongly depends on the cooling rate.Only for sufficiently fast cooling rate does the system end up in a glassy state while slow cooling inevitably leads to a crystal phase.Comment: 11 pages, 6 figure