Experimental modulation of capsule size in Cryptococcus neoformans

Experimental modulation of capsule size is an important technique for the study of the virulence of the encapsulated pathogen Cryptococcus neoformans. In this paper, we summarize the techniques available for experimental modulation of capsule size in this yeast and describe improved methods to induce capsule size changes. The response of the yeast to the various stimuli is highly dependent on the cryptococcal strain. A high CO(2) atmosphere and a low iron concentration have been used classically to increase capsule size. Unfortunately, these stimuli are not reliable for inducing capsular enlargement in all strains. Recently we have identified new and simpler conditions for inducing capsule enlargement that consistently elicited this effect. Specifically, we noted that mammalian serum or diluted Sabouraud broth in MOPS buffer pH 7.3 efficiently induced capsule growth. Media that slowed the growth rate of the yeast correlated with an increase in capsule size. Finally, we summarize the most commonly used media that induce capsule growth in C. neoformans

Inadvertent trypan blue staining of posterior capsule during cataract surgery associated with Argentinian flag event

Trypan blue is common in visualizing the anterior capsule during cataract surgery. Inadvertent staining of the posterior capsule during phacoemulsification is a rare complication and there are few reports in the literature. The proposed mechanism of posterior capsule staining in previous reports includes a compromised zonular apparatus or iris retractors facilitating the posterior flow of trypan blue. We report the first case of trypan blue staining of the posterior capsule associated with the “Argentinian flag” sign. In our case, the “Argentinian flag” allowed the trypan blue to seep between the posterior capsule and the lens, staining the anterior surface of the posterior capsule

CapProNet: Deep Feature Learning via Orthogonal Projections onto Capsule Subspaces

In this paper, we formalize the idea behind capsule nets of using a capsule vector rather than a neuron activation to predict the label of samples. To this end, we propose to learn a group of capsule subspaces onto which an input feature vector is projected. Then the lengths of resultant capsules are used to score the probability of belonging to different classes. We train such a Capsule Projection Network (CapProNet) by learning an orthogonal projection matrix for each capsule subspace, and show that each capsule subspace is updated until it contains input feature vectors corresponding to the associated class. We will also show that the capsule projection can be viewed as normalizing the multiple columns of the weight matrix simultaneously to form an orthogonal basis, which makes it more effective in incorporating novel components of input features to update capsule representations. In other words, the capsule projection can be viewed as a multi-dimensional weight normalization in capsule subspaces, where the conventional weight normalization is simply a special case of the capsule projection onto 1D lines. Only a small negligible computing overhead is incurred to train the network in low-dimensional capsule subspaces or through an alternative hyper-power iteration to estimate the normalization matrix. Experiment results on image datasets show the presented model can greatly improve the performance of the state-of-the-art ResNet backbones by $10-20\%$ and that of the Densenet by $5-7\%$ respectively at the same level of computing and memory expenses. The CapProNet establishes the competitive state-of-the-art performance for the family of capsule nets by significantly reducing test errors on the benchmark datasets.Comment: Liheng Zhang, Marzieh Edraki, Guo-Jun Qi. CapProNet: Deep Feature Learning via Orthogonal Projections onto Capsule Subspaces, in Proccedings of Thirty-second Conference on Neural Information Processing Systems (NIPS 2018), Palais des Congr\`es de Montr\'eal, Montr\'eal, Canda, December 3-8, 201

Attention-Based Capsule Networks with Dynamic Routing for Relation Extraction

A capsule is a group of neurons, whose activity vector represents the instantiation parameters of a specific type of entity. In this paper, we explore the capsule networks used for relation extraction in a multi-instance multi-label learning framework and propose a novel neural approach based on capsule networks with attention mechanisms. We evaluate our method with different benchmarks, and it is demonstrated that our method improves the precision of the predicted relations. Particularly, we show that capsule networks improve multiple entity pairs relation extraction.Comment: To be published in EMNLP 201

VideoCapsuleNet: A Simplified Network for Action Detection

The recent advances in Deep Convolutional Neural Networks (DCNNs) have shown extremely good results for video human action classification, however, action detection is still a challenging problem. The current action detection approaches follow a complex pipeline which involves multiple tasks such as tube proposals, optical flow, and tube classification. In this work, we present a more elegant solution for action detection based on the recently developed capsule network. We propose a 3D capsule network for videos, called VideoCapsuleNet: a unified network for action detection which can jointly perform pixel-wise action segmentation along with action classification. The proposed network is a generalization of capsule network from 2D to 3D, which takes a sequence of video frames as input. The 3D generalization drastically increases the number of capsules in the network, making capsule routing computationally expensive. We introduce capsule-pooling in the convolutional capsule layer to address this issue which makes the voting algorithm tractable. The routing-by-agreement in the network inherently models the action representations and various action characteristics are captured by the predicted capsules. This inspired us to utilize the capsules for action localization and the class-specific capsules predicted by the network are used to determine a pixel-wise localization of actions. The localization is further improved by parameterized skip connections with the convolutional capsule layers and the network is trained end-to-end with a classification as well as localization loss. The proposed network achieves sate-of-the-art performance on multiple action detection datasets including UCF-Sports, J-HMDB, and UCF-101 (24 classes) with an impressive ~20% improvement on UCF-101 and ~15% improvement on J-HMDB in terms of v-mAP scores

Radiometric temperature analysis of the Hayabusa spacecraft re-entry

Hayabusa, an unmanned Japanese spacecraft, was launched to study and collect samples from the surface of the asteroid 25143 Itokawa. In June 2010, the Hayabusa spacecraft completed it’s seven year voyage. The spacecraft and the sample return capsule (SRC) re-entered the Earth’s atmosphere over the central Australian desert at speeds on the order of 12 km/s. This provided a rare opportunity to experimentally investigate the radiative heat transfer from the shock-compressed gases in front of the sample return capsule at true-flight conditions. This paper reports on the results of observations from a tracking camera situated on the ground about 100 km from where the capsule experienced peak heating during re-entry