DCC: Attractive Idea Seeks Serious Confirmation

The theoretical ideas relevant for the physics of the disoriented chiral condensate (DCC) are reviewed.Comment: 18 pages LaTex, based on invited lecture given by A.Krzywicki at the workshop "Quark, plasma and beyond", Zif, Bielefeld, May 1996 ; a reference is correcte

Edge usage, motifs and regulatory logic for cell cycling genetic networks

The cell cycle is a tightly controlled process, yet its underlying genetic network shows marked differences across species. Which of the associated structural features follow solely from the ability to impose the appropriate gene expression patterns? We tackle this question in silico by examining the ensemble of all regulatory networks which satisfy the constraint of producing a given sequence of gene expressions. We focus on three cell cycle profiles coming from baker's yeast, fission yeast and mammals. First, we show that the networks in each of the ensembles use just a few interactions that are repeatedly reused as building blocks. Second, we find an enrichment in network motifs that is similar in the two yeast cell cycle systems investigated. These motifs do not have autonomous functions, but nevertheless they reveal a regulatory logic for cell cycling based on a feed-forward cascade of activating interactions.Comment: 9 pages, 9 figures, to be published in Phys. Rev.

Perturbing General Uncorrelated Networks

This paper is a direct continuation of an earlier work, where we studied Erd\"os-R\'enyi random graphs perturbed by an interaction Hamiltonian favouring the formation of short cycles. Here, we generalize these results. We keep the same interaction Hamiltonian but let it act on general graphs with uncorrelated nodes and an arbitrary given degree distribution. It is shown that the results obtained for Erd\"os-R\'enyi graphs are generic, at the qualitative level. However, scale-free graphs are an exception to this general rule and exhibit a singular behaviour, studied thoroughly in this paper, both analytically and numerically.Comment: 7 pages, 7 eps figures, 2-column revtex format, references adde