560 research outputs found
DNA: stabiel en veranderlijk
DNA en kanker zijn onlosmakelijk met elkaar verbonden. Kanker is een ziekte van
het DNA. Het zijn veranderingen in het DNA die van een gewone cel een kankercel
maken. In de Verenigde Staten van Amerika is kanker inmiddels de belangrijkste
doodsoorzaak|1. De sterfte aan hart en vaatziekten is de laatste decennia hard omlaag
gegaan. Bij kanker gaat dat helaas beduidend minder snel. Waarom is dat het geval en
wat maakt kanker zoβn lastig probleem? Ik zal proberen u in grote lijnen een beeld te
schetsen van de huidige stand van de wetenschap met betrekking tot de moleculaire
achtergronden van tumorontwikkeling en de problemen die er zijn in het onderzoek
aan kanker.
Rede,
in verkorte vorm
uitgesproken ter gelegenheid
van het aanvaarden van het ambt van
bijzonder hoogleraar met als leeropdracht
Moleculaire Pathologie van Tumorontwikkeling
aan het Erasmus MC, faculteit van de
Erasmus Universiteit Rotterdam
op 10 oktober 2008
A SNaPshot assay for the rapid and simple detection of four common hotspot codon mutations in the PIK3CA gene
<p>Abstract</p> <p>Background</p> <p>Activating mutations in the <it>PIK3CA </it>gene have been identified in a variety of human malignancies and are commonly detected in hotspot codons located in the helical and kinase domains in exons 9 and 20. Existing methodologies for the detection of <it>PIK3CA </it>mutations are time-consuming and/or expensive. In the present study we describe the first application of a <it>PIK3CA </it>SNaPshot assay to the screening of frequent mutations in these exons.</p> <p>Findings</p> <p>A SNaPshot assay for the simultaneous detection of four frequent PIK3CA hotspot mutations (E542K, E545G, E545K and H1047R) has been developed and evaluated. The assay combines multiplex PCR amplification with a multiplex primer extension assay to allow targeted detection of all four mutations in one reaction. The method was tested using samples that had previously been analysed for mutations by high-resolution melting analysis and sequencing. All mutations detected were concordant and no false positive results were obtained. Sensitivity tests showed that the SNaPshot assay could detect mutant DNA when it represents 5β10% of the total DNA present. The application of the method to the analysis of DNAs extracted from formalin-fixed paraffin-embedded samples was also demonstrated.</p> <p>Conclusion</p> <p>The SNaPshot assay described here offers a fast, sensitive, inexpensive and specific approach to the analysis of frequent <it>PIK3CA </it>mutations in both fresh and archival patient samples.</p
CDNA cloning and mRNA expression of the six mouse insulin-like growth factor binding proteins
The insulin-like growth factor binding proteins (IGFBPs) comprise a family of six distinct proteins which modulate insulin-like growth factor action. We have isolated cDNAs encoding the six mouse IGFBPs (mIGFBPs). In addition, we studied the mRNA expression of the six mIGFBPs during development and in various adult tissues. Our results show that each of the six mIGFBPs is highly homologous to their human and rat counterparts, whereas only the N and C terminal ends are conserved between the six mIGFBPs. Northern blotting revealed that mIGFBP-2, -3, -4 and -5 genes are already expressed at gestational day 11.5, suggesting a role for these mIGFBPs in embryonal development. In liver, a peak of mIGFBP-1 mRNA expression was found around birth, suggesting a function for mIGFBP-1 in the newborn mouse. Finally, tissue-specific expression of the six mouse IGFBP genes was observed in adult tissues suggesting different roles or modes of actions in adult life
Insulin-like growth factor binding protein-2, 28 kDa an 24 kDa insulin-like growth factor binding protein levels are decreased in fluid of dominant follicles, obtained from normal and polycystic ovaries
In order to investigate potential changes in insulin-like growth factor binding proteins (IGFBPs) during human follicle maturation, we examined the IGFBP profiles in follicular fluid from follicles in different stages of maturation. Samples were obtained from ovaries of women with regular menstrual cycles and of subjects with cycle abnormalities and polycystic ovaries (diagnosed as polycystic ovary syndrome (PCOS)) and analyzed by Western ligand blotting. IGFBPs of 43 kDa, 37 kDa, 31 kDa, a doublet around 28 kDa and a minor band of 24 kDa were detected in follicle fluid of normal non-dominant (size 4) follicles of both regularly menstruating women and PCOS patients. The 43 and 37 kDa IGFBPs could be identified as IGFBP-3 and the 31 kDa IGFBP as IGFBP-2, whereas the 28 kDa IGFBP could not be identified as IGFBP-1, all by immunoblotting techniques. A dramatic decrease in IGFBP-2, the 28 kDa and 24 kDa IGFBPs was observed in follicular fluid of dominant follicles (size > 10 mm) of both regular menstruating individuals and one PCOS patient as compared with follicular fluid of normal non-dominant or atretic follicles. These observations indicate that the PCOS follicle may not be different from normal with respect to IGFBP profiles. Furthermore, these results suggest that at least one of these IGFBPs might be involved in human folliculogenesis
Modulation of intra-epithelial expansion of human T24 bladder-carcinoma cells in murine urothelium by growth factors and extracellular-matrix components
The high recurrence rate of bladder cancer is probably due to an efficient repopulation of the bladder by residual transformed cells after resection of the tumour. However, the regenerating capacity of the normal urothelial cells is very high. To study the balance between regenerating normal urothelium and outgrowth of transformed urothelial cells, we recently developed an in vitro co-cultivation model. With this model system we studied the effects of growth factors and extracellular-matrix components on the intra-epithelial expansion of human T24 bladder-carcinoma cells in primary mouse-bladder explants. Exposure of the cultures to acidic fibroblast growth factor (aFGF) and laminin led to a dramatic increase in the number of invasive T24 cells into the primary urothelium. Epidermal growth factor (EGF) and collagen types I and IV counteracted the infiltration of individual T24 cells. EGF, aFGF, laminin and collagen types I and IV did not directly affect the migration and proliferation of T24 cells. Apparently, the efficacy of invasion of transformed urothelial cells into primary urothelium is not only dependent on the intrinsic characteristics of the transformed cells, but can be influenced to a considerable extent by exogenous components exerting their influence on the normal urothelium. The clinical relevance of this observation needs to be studied further
FGFR3 and P53 characterize alternative genetic pathways in the pathogenesis of urothelial cell carcinoma
Fibroblast growth factor receptor 3 (FGFR3) and P53 mutations are
frequently observed in bladder cancer. We here describe the distribution
of FGFR3 mutations and P53 overexpression in 260 primary urothelial cell
carcinomas. FGFR3 mutations were observed in 59% and P53 overexpression in
25%. Interestingly, FGFR3 and P53 alterations were mutually exclusive,
because they coincided in only 5.7% of tumors. Consequently, we propose
that they characterize two alternative genetic pathways in urothelial cell
carcinoma pathogenesis. The genetic alterations were reflected in the
pathology and the clinical outcome, i.e., FGFR3 mutations were found in
low-stage/-grade tumors and were associated with a favorable disease
course, whereas P53 alterations were tied to adverse disease parameters
An in vitro model of urothelial regeneration: Effects of growth factors and extracellular matrix proteins
Although the cellular turnover of resting urothelium is very low, its regenerative capacity is known to be outstanding. In organotypic mouse urothelial cultures closely mimicking the differentiation and multilayering of normal urothelium, we examined the cell biological mechanisms underlying urothelial regeneration and the specific role of growth factors and several extracellular matrix (ECM) components. Exposure to epidermal growth factor (EGF) and acidic fibroblast growth factor (aFGF) and culture on laminin resulted in enhanced expansion of the urothelium. Microscopy and assessment of proliferative activity revealed that enhanced urothelial expansion due to EGF could be attributed to increased proliferative activity and an increase in cell numbers, whereas aFGF-stimulated expansion must be considered the consequence of increased cellularity and migration. Laminin-enhanced urothelial expansion was shown to be the result of spreading of the entire urothelial organotypic culture. This was associated with a considerable decrease in the number of cell layers. A synergistic effect of growth factors and laminin was not found. This organotypic urothelial cell culture model seems to be very useful in studying strategies to improve urothelial regeneration
A noninvasive multi-analyte diagnostic assay: Combining protein and DNA markers to stratify bladder cancer patients
Purpose: The authors recently reported the development of a noninvasive diagnostic assay using urinary matrix metalloproteinases (MMPs) as monitors of disease-free status and bladder cancer in high-risk populations. Using an approach called clinical intervention determining diagnostic (CIDD), they identified with high confidence those patients who could be excluded from additional intervention. To maximize performance, MMPs were combined with DNAbased markers and CIDD was applied to a population of patients undergoing monitoring for recurrence. Patients and methods: Urine samples were obtained from 323 patients, 48 of whom had a recurrence and 275 of whom did not have cancer upon cytoscopic evaluation. Twist1 and Nid2 methylation status was determined using methylation-specific polymerase chain reaction, FGFR3 mutational status by quantitative PCR, and MMP levels by enzyme-linked immunosorbent assay. Results: Using a combination of these DNA and protein markers, the authors identified with high confidence (97% negative predicted value) those patients who do not have cancer. Cutoffs were adjusted such that at 92% sensitivity, 51% of disease-free patients might be triaged from receiving further tests. Conclusion: The multi-analyte diagnostic readout assay described here is the first to combine protein and DNA biomarkers into one assay for optimal clinical performance. Using this approach, the detection of FGFR3 mutations and Twist1 and Nid2 methylation in the urine of patients undergoing bladder cancer recurrence screening increase the sensitivity and negative predictive value at an established MMP protein cutoff. This noninvasive urinary diagnostic assay could lead to the more efficient triage of patients undergoing recurrence monitoring
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