Synchronization of groups of coupled oscillators with sparse connections

Synchronization of groups of coupled oscillators with sparse connections are explored. It is found that different topologies of intergroup couplings may lead to different synchronizability. In the strong-coupling limit, an analytical treatment and criterion is proposed to judge the synchronization between communities of oscillators, and an optimal connection scheme for the group synchronization is given. By varying the intergroup and intragroup coupling strengths, different synchronous phases, i.e., the unsynchronized state, intragroup synchronization, intergroup synchronization, and global synchronization are revealed. The present discussions and results can be applied to study the pattern formation and synchronization of coupled spatiotemporal systems

Quasiperiodic, periodic, and slowing-down states of coupled heteroclinic cycles

We investigate two coupled oscillators, each of which shows an attracting heteroclinic cycle in the absence of coupling. The two heteroclinic cycles are nonidentical. Weak coupling can lead to the elimination of the slowing-down state that asymptotically approaches the heteroclinic cycle for a single cycle, giving rise to either quasiperiodic motion with separate frequencies from the two cycles or periodic motion in which the two cycles are synchronized. The synchronization transition, which occurs via a Hopf bifurcation, is not induced by the commensurability of the two cycle frequencies but rather by the disappearance of the weaker frequency oscillation. For even larger coupling the motion changes via a resonant heteroclinic bifurcation to a slowing-down state corresponding to a single attracting heteroclinic orbit. Coexistence of multiple attractors can be found for some parameter regions. These results are of interest in ecological, sociological, neuronal, and other dynamical systems, which have the structure of coupled heteroclinic cycles

Multiple-trait quantitative trait locus mapping with incomplete phenotypic data

<p>Abstract</p> <p>Background</p> <p>Conventional multiple-trait quantitative trait locus (QTL) mapping methods must discard cases (individuals) with incomplete phenotypic data, thereby sacrificing other phenotypic and genotypic information contained in the discarded cases. Under standard assumptions about the missing-data mechanism, it is possible to exploit these cases.</p> <p>Results</p> <p>We present an expectation-maximization (EM) algorithm, derived for recombinant inbred and F₂genetic models but extensible to any mating design, that supports conventional hypothesis tests for QTL main effect, pleiotropy, and QTL-by-environment interaction in multiple-trait analyses with missing phenotypic data. We evaluate its performance by simulations and illustrate with a real-data example.</p> <p>Conclusion</p> <p>The EM method affords improved QTL detection power and precision of QTL location and effect estimation in comparison with case deletion or imputation methods. It may be incorporated into any least-squares or likelihood-maximization QTL-mapping approach.</p

Orbital magnetization and its effects in spin-chiral ferromagnetic Kagome lattice

Recently, Berry phase in the semiclassical dynamical of Bloch electrons has been found to make a correction to the phase-space density of states and a general multi-band formula for finite-temperature orbital magnetization has been given [Phys. Rev. Lett. \textbf{97}, 026603 (2006)], where the orbital magnetization $\mathcal{M}$ consists of two parts, i.e., the conventional part $M_{c}$ and the Berry-phase correction part $M_{\Omega}$. Using this general formula, we theoretically investigate the orbital magnetization and its effects on thermoelectric transport and magnetic susceptibility properties of the two-dimensional \textit{kagom\'{e}} lattice with spin anisotropies included. The study in this paper is highly interesting by the occurrence of nonzero Chern number in the lattice. The spin chirality parameter $\phi$ (see text) results in profound effects on the orbital magnetization properties. It is found that the two parts in orbital magnetization opposite each other. In particular, we show that $M_{c}$ and $M_{\Omega}$ yield the paramagnetic and diamagnetic responses, respectively. It is further shown that the orbital magnetization displays fully different behavior in the metallic and insulating regions, which is due to the different roles $M_{c}$ and $M_{\Omega}$ play in these two regions. The anomalous Nernst conductivity is also calculated, which displays a peak-valley structure as a function of the electron Fermi energy.Comment: 9 pages, 7 figure

Microscopic Modeling of the Growth of Order in an Alloy: Nucleated and Continuous Ordering

We study the early-stages of ordering in $Cu_3 Au$ using a model Hamiltonian derived from the effective medium theory of cohesion in metals: an approach providing a microscopic description of interatomic interactions in alloys. Our simulations show a crossover from a nucleated growth regime to a region where the ordering does not follow any simple growth laws. This mirrors the experimental observations in $Cu_3 Au$. The kinetics of growth, obtained from the simulations, is in semi-quantitative agreement with experiments. The real-space structures observed in our simulations offer some insight into the nature of early-stage kineticsComment: 13 pages, Revtex, 3 postscript figures in a second file

Minimum-action paths for wave-number selection in nonequilibrium systems

The problem of wave-number selections in nonequilibrium pattern-forming systems in the presence of noise is investigated. The minimum-action method is proposed to study the noise-induced transitions between the different spatiotemporal states by generalizing the traditional theory previously applied in low-dimensional dynamical systems. The scheme is shown as an example in the stabilized Kuramoto-Sivashinsky equation. The present method allows us to conveniently find the unique noise selected state, in contrast to previous work using direct simulations of the stochastic partial differential equation, where the constraints of the simulation only allow a narrow band to be determined

Atomic oxygen adsorption and incipient oxidation of the Pb(111) surface: A density-functional theory study

We study the atomic oxygen adsorption on Pb(111) surface by using density-functional theory within the generalized gradient approximation and a supercell approach. The atomic and energetic properties of purely on-surface and subsurface oxygen structures at the Pb(111) surface are systematically investigated for a wide range of coverages and adsorption sites. The fcc and tetra-II sites (see the text for definition) are found to be energetically preferred for the on-surface and subsurface adsorption, respectively, in the whole range of coverage considered. The on-surface and subsurface oxygen binding energies monotonically increase with the coverage, and the latter is always higher than the former, thus indicating the tendency to the formation of oxygen islands (clusters) and the higher stability of subsurface adsorption. The on-surface and subsurface diffusion-path energetics of atomic oxygen, and the activation barriers for the O penetration from the on-surface to the subsurface sites are presented at low and high coverages. In particular, it is shown that the penetration barrier from the on-surface hcp to the subsurface tetra-I site is as small as 65 meV at low coverage ($\Theta$=0.25). The other properties of the O/Pb(111) system, including the charge distribution, the lattice relaxation, the work function, and the electronic density of states, are also studied and discussed in detail, which consistently show the gradually stabilizing ionic O-Pb bond with increase of the oxygen coverage.Comment: 31 pages, 16 figure