Overexpression profiling reveals cellular requirements in the context of genetic backgrounds and environments

Overexpression can help life adapt to stressful environments, making an examination of overexpressed genes valuable for understanding stress tolerance mechanisms. However, a systematic study of genes whose overexpression is functionally adaptive (GOFAs) under stress has yet to be conducted. We developed a new overexpression profiling method and systematically identified GOFAs in Saccharomyces cerevisiae under stress (heat, salt, and oxidative). Our results show that adaptive overexpression compensates for deficiencies and increases fitness under stress, like calcium under salt stress. We also investigated the impact of different genetic backgrounds on GOFAs, which varied among three S. cerevisiae strains reflecting differing calcium and potassium requirements for salt stress tolerance. Our study of a knockout collection also suggested that calcium prevents mitochondrial outbursts under salt stress. Mitochondria-enhancing GOFAs were only adaptive when adequate calcium was available and non-adaptive when calcium was deficient, supporting this idea. Our findings indicate that adaptive overexpression meets the cell's needs for maximizing the organism's adaptive capacity in the given environment and genetic context. Author summaryThe study aimed to investigate how overexpression of genes can aid organisms in adapting to stress. The researchers utilized a new method to identify genes in yeast that demonstrated functional adaptability when overexpressed under stress such as heat, salt, and oxidative stress. The results indicated that overexpressing specific genes, like calcium, during salt stress could counteract deficiencies and improve the organism's ability to withstand stress. The study also examined the effect of different genetic backgrounds on these genes and discovered that the impact differed among various yeast strains. Additionally, the study revealed that calcium could play a key role in adapting to salt stress by preventing mitochondrial outbursts. These findings suggest that overexpressing certain genes can help the organism maximize its adaptability to stress in a given environment and genetic context

Acute Polyradiculoneuropathy Associated With Salmonella Gastroenteritis

We reported a case of acute polyradiculoneuropathy associated with Salmonella gastroenteritis. A68-year-oldman developed progressive motor weakness and areflexia following the febrile illness and diarrhea caused by a strain of Salmonella species O8 group. He showed a rapid and complete recovery from the illness. This is the first report in which Salmonella gastroenteritis might be etiologically related to an acute polyradiculoneuropathy

ATF6α/β-mediated adjustment of ER chaperone levels is essential for development of the notochord in medaka fish.

ATF6α and ATF6β are membrane-bound transcription factors activated by regulated intramembrane proteolysis in response to endoplasmic reticulum (ER) stress to induce various ER quality control proteins. ATF6α- and ATF6β single-knockout mice develop normally, but ATF6α/β double knockout causes embryonic lethality, the reason for which is unknown. Here we show in medaka fish that ATF6α is primarily responsible for transcriptional induction of the major ER chaperone BiP and that ATF6α/β double knockout, but not ATF6α- or ATF6β single knockout, causes embryonic lethality, as in mice. Analyses of ER stress reporters reveal that ER stress occurs physiologically during medaka early embryonic development, particularly in the brain, otic vesicle, and notochord, resulting in ATF6α- and ATF6β-mediated induction of BiP, and that knockdown of the α1 chain of type VIII collagen reduces such ER stress. The absence of transcriptional induction of several ER chaperones in ATF6α/β double knockout causes more profound ER stress and impaired notochord development, which is partially rescued by overexpression of BiP. Thus ATF6α/β-mediated adjustment of chaperone levels to increased demands in the ER is essential for development of the notochord, which synthesizes and secretes large amounts of extracellular matrix proteins to serve as the body axis before formation of the vertebra

Antiphospholipid Antibodies in Patients with Myasthenia Gravis

We measured antiphospholipid antibodies in sera from 94 patients with myasthenia gravis (MG). We found lgG aCL in 14/94 (14.9 % )lgM aCL in 6/94 (6.4 %) and LA in 4/56 (7.1 %) patients with MG. As a whole 21 of 94 (22.3 % ) patients with MG had some aPL. There was no correlation between the presence of aPL and the severity of MGthe presence of hyperplasia of thymustiter of the antiacetylcholine receptor antibodies or anti-single stranded DNA antibodies. Though the percentage of malignant thymoma with aPL were higher than that of malignant thymoma without aPLwe thought that aPL were not the specific antibody in malignant thymoma. In MGaPL did not play as the aCL syndrome and seemed to be non-specific antibodies

Mutations observed in mitochondrial DNA of salmon collected in Mano River, Fukushima Prefecture, Japan

On March 11, 2011, a great earthquake occurred off the east coast of Honshu Island, Japan. The consequent breakdown of the Fukushima Daiichi Nuclear Power Plant (FDNPP) caused a massive release of radionuclides into terrestrial and marine environments and into the atmosphere. The Abukuma Mountains region is one of the areas highly polluted by this accident. Freshwater fishes continued to live in this area after the FNPP accident became so polluted. Mitochondrial DNA (mtDNA) usually transfers from the mother to the next generation clonally. Therefore, it is one of the best genetic predictors of the effect of radiation on DNA. The influence of radiation can be presumed by comparing mtDNA between larval fish and their female parent. mtDNA of masu salmon was collected from an area highly polluted, namely, the upstream portion of Mano River, and compared it with that from nonpolluted cultured masu salmon. While no mutations were observed in the cultured masu salmon, those collected from Mano River exhibited three types of subdivisions in the Cytb region and two types of subdivisions in the D-loop region of mtDNA. These results suggest that exposure to radioactive cesium causes a base exchange in DNA. But the mutations observed were not serious enough to affect the masu salmon phenotype

Iron supply to the western subarctic Pacific : Importance of iron export from the Sea of Okhotsk

Iron is an essential nutrient and plays an important role in the control of phytoplankton growth (Martin et al., 1989). Atmospheric dust has been thought to be the most important source of iron, supporting annual biological production in the western subarctic Pacific (WSP) (Duce and Tindale, 1991; Moore et al., 2002). We argue here for another source of iron to the WSP. We found extremely high concentrations of dissolved and particulate iron in the Okhotsk Sea Intermediate Water (OSIW) and the North Pacific Intermediate Water (NPIW), and water ventilation processes in this region probably control the transport of iron through the intermediate water layer from the continental shelf of the Sea of Okhotsk to wide areas of the WSP. Additionally, our time series data in the Oyashio region of the WSP indicate that the pattern of seasonal changes in dissolved iron concentrations in the surface-mixed layer was similar to that of macronutrients, and that deep vertical water mixing resulted in higher winter concentrations of iron in the surface water of this region. The estimated dissolved iron supply from the iron-rich intermediate waters to the surface waters in the Oyashio region was comparable to or higher than the reported atmospheric dust iron input and thus a major source of iron to these regions. Our data suggest that the consideration of this source of iron is essential in our understanding of spring biological production and biogeochemical cycles in the western subarctic Pacific and the role of the marginal sea

Effect of iron enrichment on the dynamics of transparent exopolymer particles in the western subarctic Pacific

Dynamics of transparent exopolymer particles (TEP) was studied during the first in situ iron-enrichment experiment conducted in the western subarctic Pacific in July-August 2001, with the goal of evaluating the contribution of TEP to vertical flux as a result of increased primary production following iron enrichment in open ocean ecosystems. Subsequent to the enhancement of phytoplankton production, we observed increase in TEP concentration in the surface layer and sedimentation of organic matter beneath it. Vertical profiles of TEP, chlorophyll a (Chl a) and particulate organic carbon (POC) were obtained from six depths between 5 and 70 m, from a station each located inside and outside the enriched patch. TEP and total mass flux were estimated from the floating sediment traps deployed at 200 m depth. Chl a and TEP concentrations outside the patch varied from 0.2 to 1.9 ug L-1 and 40-60 ug XG equiv. L-1, respectively. Inside the patch, Chl a increased drastically from day 7 reaching the peak of 19.2 ug L-1 on day 13, which coincided with the TEP peak of 189 ug XG equiv. L-1. TEP flux in the sediment trap increased from 41 to 88 mg XG equiv. m-2 d-1, with 8-14% contribution of TEP to total mass flux. This forms the basic data set on ambient concentrations of TEP in the western subarctic Pacific, and evaluation of the effect of iron enrichment on TEP