AU-PD: An Arbitrary-size and Uniform Downsampling Framework for Point Clouds

Point cloud downsampling is a crucial pre-processing operation to downsample the points in the point cloud in order to reduce computational cost, and communication load, to name a few. Recent research on point cloud downsampling has achieved great success which concentrates on learning to sample in a task-aware way. However, existing learnable samplers can not perform arbitrary-size sampling directly. Moreover, their sampled results always comprise many overlapping points. In this paper, we introduce the AU-PD, a novel task-aware sampling framework that directly downsamples point cloud to any smaller size based on a sample-to-refine strategy. Given a specified arbitrary size, we first perform task-agnostic pre-sampling to sample the input point cloud. Then, we refine the pre-sampled set to make it task-aware, driven by downstream task losses. The refinement is realized by adding each pre-sampled point with a small offset predicted by point-wise multi-layer perceptrons (MLPs). In this way, the sampled set remains almost unchanged from the original in distribution, and therefore contains fewer overlapping cases. With the attention mechanism and proper training scheme, the framework learns to adaptively refine the pre-sampled set of different sizes. We evaluate sampled results for classification and registration tasks, respectively. The proposed AU-PD gets competitive downstream performance with the state-of-the-art method while being more flexible and containing fewer overlapping points in the sampled set. The source code will be publicly available at https://zhiyongsu.github.io/Project/AUPD.html

Contribution of the vertical movement of dissolved organic carbon to carbon allocation in two distinct soil types under Castanopsis fargesii Franch. and C. carlesii (Hemsl.) Hayata forests

International audienceAbstractKey messageThe vertical transport of dissolved organic carbon (DOC) is an important determinant of carbon distribution across a soil profile. The transport of DOC down a soil profile can be largely influenced by incoming DOC and soil organic carbon (SOC) levels, which insulate DOC from adsorption processes regulated by soil texture and Fe/Al mineralogy.ContextUncertainties about how soil properties affect DOC transport through the soil profile require study because soils can differ strongly with respect to texture or Fe/Al mineralogy and yet retain similar quantities of DOC.AimsThis study aimed to assess the role of incoming DOC and native SOC in regulating DOC migration in soils and investigate the contribution of DOC movement to SOC allocation.MethodsWe leached a standard DOC solution extracted from Castanopsis carlesii litter through two distinct soil types, using two leaching strategies: single leaching and sequential leaching. The two soil types under a natural Castanopsis carlesii (Hemsl.) Hayata forest and a natural Castanopsis fargesii Franch. forest, respectively, differ strongly with respect to soil texture, Fe/Al oxide abundances, and SOC nature.ResultsWith single leaching, where each of six soil layers making up an entire 0–100-cm soil depth profile received single doses of standard DOC solution, deeper soil layers retained more DOC than upper soil layers, with native SOC largely masking the effects of soil texture and Fe/Al mineralogy on DOC migration. Following sequential leaching, where a sixfold larger amount of standard DOC solution sequentially percolated through the six soil layers, the upper soil layers generally retained more DOC than deeper layers. Nevertheless, in sequential leaching, desorption-induced transfer of carbon from upper soil layers to deeper soil layers resulted in greater total carbon retention than in single leaching.ConclusionForest subsoils (40–100 cm) are well below C saturation, but DOC vertical movement from top soils only transfers limited organic carbon to them. However, DOC vertical movement may greatly alter SOC allocation along the top soil profile (0–40 cm), with part of outer sphere native SOC displaced by incoming DOC and migrating downwards, which is a natural way to preserve SOC

Effects of species-dominated patches on soil organic carbon and total nitrogen storage in a degraded grassland in China

Background Patchy vegetation is a very common phenomenon due to long-term overgrazing in degraded steppe grasslands, which results in substantial uncertainty associated with soil carbon (C) and nitrogen (N) dynamics because of changes in the amount of litter accumulation and nutrition input into soil. Methods We investigated soil C and N stocks beneath three types of monodominant species patches according to community dominance. Stipa krylovii patches, Artemisia frigida patches, and Potentilla acaulis patches represent better to worse vegetation conditions in a grassland in northern China. Results The results revealed that the soil C stock (0–40 cm) changed significantly, from 84.7 to 95.7 Mg ha−1, and that the soil organic carbon content (0–10 cm) and microbial biomass carbon (0–10 and 10–20 cm) varied remarkably among the different monodominant species communities (P < 0.05). However, soil total nitrogen and microbial biomass nitrogen showed no significant differences among different plant patches in the top 0–20 cm of topsoil. The soil C stocks under the P. acaulis and S. krylovii patches were greater than that under the A. frigida patch. Our study implies that accurate estimates of soil C and N storage in degenerated grassland require integrated analyses of the concurrent effects of differences in plant community composition

Genome sequencing and analysis of the paclitaxelproducing endophytic fungus \u3cem\u3ePenicillium aurantiogriseum\u3c/em\u3e NRRL 62431

Background Paclitaxel (Taxol™) is an important anticancer drug with a unique mode of action. The biosynthesis of paclitaxel had been considered restricted to the Taxus species until it was discovered in Taxomyces andreanae, an endophytic fungus of T. brevifolia. Subsequently, paclitaxel was found in hazel (Corylus avellana L.) and in several other endophytic fungi. The distribution of paclitaxel in plants and endophytic fungi and the reported sequence homology of key genes in paclitaxel biosynthesis between plant and fungi species raises the question about whether the origin of this pathway in these two physically associated groups could have been facilitated by horizontal gene transfer. Results The ability of the endophytic fungus of hazel Penicillium aurantiogriseum NRRL 62431 to independently synthesize paclitaxel was established by liquid chromatography-mass spectrometry and proton nuclear magnetic resonance. The genome of Penicillium aurantiogriseum NRRL 62431 was sequenced and gene candidates that may be involved in paclitaxel biosynthesis were identified by comparison with the 13 known paclitaxel biosynthetic genes in Taxus. We found that paclitaxel biosynthetic gene candidates in P. aurantiogriseum NRRL 62431 have evolved independently and that horizontal gene transfer between this endophytic fungus and its plant host is unlikely. Conclusions Our findings shed new light on how paclitaxel-producing endophytic fungi synthesize paclitaxel, and will facilitate metabolic engineering for the industrial production of paclitaxel from fungi

Nitric oxide-induced lipophagic defects contribute to testosterone deficiency in rats with spinal cord injury

IntroductionMales with acute spinal cord injury (SCI) frequently exhibit testosterone deficiency and reproductive dysfunction. While such incidence rates are high in chronic patients, the underlying mechanisms remain elusive.Methods and resultsHerein, we generated a rat SCI model, which recapitulated complications in human males, including low testosterone levels and spermatogenic disorders. Proteomics analyses showed that the differentially expressed proteins were mostly enriched in lipid metabolism and steroid metabolism and biosynthesis. In SCI rats, we observed that testicular nitric oxide (NO) levels were elevated and lipid droplet-autophagosome co-localization in testicular interstitial cells was decreased. We hypothesized that NO impaired lipophagy in Leydig cells (LCs) to disrupt testosterone biosynthesis and spermatogenesis. As postulated, exogenous NO donor (S-nitroso-N-acetylpenicillamine (SNAP)) treatment markedly raised NO levels and disturbed lipophagy via the AMPK/mTOR/ULK1 pathway, and ultimately impaired testosterone production in mouse LCs. However, such alterations were not fully observed when cells were treated with an endogenous NO donor (L-arginine), suggesting that mouse LCs were devoid of an endogenous NO-production system. Alternatively, activated (M1) macrophages were predominant NO sources, as inducible NO synthase inhibition attenuated lipophagic defects and testosterone insufficiency in LCs in a macrophage-LC co-culture system. In scavenging NO (2-4-carboxyphenyl-4,4,5,5-tetramethylimidazoline-1-oxyl-3-oxide (CPTIO)) we effectively restored lipophagy and testosterone levels both in vitro and in vivo, and importantly, spermatogenesis in vivo. Autophagy activation by LYN-1604 also promoted lipid degradation and testosterone synthesis.DiscussionIn summary, we showed that NO-disrupted-lipophagy caused testosterone deficiency following SCI, and NO clearance or autophagy activation could be effective in preventing reproductive dysfunction in males with SCI

Transcriptome analysis of Hpa1Xoo transformed cotton revealed constitutive expression of genes in multiple signalling pathways related to disease resistance

The transcriptome profile in leaves and roots of the transgenic cotton line T-34 expressing hpa1Xoo from Xanthomonas oryzae pv. oryzae was analysed using a customized 12k cotton cDNA microarray. A total of 530 cDNA transcripts involved in 34 pathways were differentially expressed in the transgenic line T-34, in which 123 differentially expressed genes were related to the cotton defence responses including the hypersensitive reaction, defence responses associated with the recognition of pathogen-derived elicitors, and defence signalling pathways mediated by salicylic acid, jasmonic acid, ethylene, auxin, abscicic acid, and Ca2+. Furthermore, transcripts encoding various leucine-rich protein kinases and mitogen-activated protein kinases were up-regulated in the transgenic line T-34 and expression of transcripts related to the energy producing and consuming pathway was also increased, which suggested that the enhanced metabolism related to the host defence response in the transgenic line T-34 imposed an increased energy demand on the transgenic plant

On the analysis of selected automated storage and retrieval systems

Ph.D.John A. Whit

Forest Soil Carbon Cycle in Response to Global Change

Forests constitute a critical component of terrestrial carbon reservoirs, with a substantial amount of carbon stored in soil as organic carbon, holding significant potential for climate change mitigation [...