143 research outputs found

    A novel signature based on microvascular invasion predicts the recurrence of HCC.

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    BACKGROUND AND OBJECTIVES: In hepatocellular carcinoma (HCC) patients, microvascular invasion (MVI) is associated with worse outcomes regardless of treatment. No single reliable preoperative factor exists to predict MVI. The aim of the work described here was to develop a new MVI- based mRNA biomarker to differentiate between high and low risk patients. METHODS: Using The Cancer Genome Atlas (TCGA) database, we collected data from 315 HCC patients, including mRNA expression and complete clinical data. We generated a seven-mRNA signature to predict patient outcomes. The mRNA signature was validated using the GSE36376 cohort. Finally, we tested the formula in our own 53 HCC patients using qPCR for the seven mRNAs and analyzing the computed tomography (CT) features. RESULTS: This seven-mRNA signature significantly correlated with length of recurrence-free survival (RFS) and overall survival (OS) for both the training and validation groups. RFS and OS were briefer in high risk versus low risk patients. A Kaplan-Meier analysis also indicated that survival time was significantly shortened in the high risk group versus the low risk group. Time-dependent receiver operating characteristic analysis demonstrated good predictive performance for the seven-mRNA signature. The mRNA signature also acts as an independent factor according to a Multivariate analysis. Our results are consistent with the seven-mRNA formula risk score. CONCLUSION: Our research showed a novel seven-mRNA biomarker based on MVI predicting RFS and OS in HCC patients. This mRNA signature can stratify patients into subgroups based on their risk of recurrence to help guide individualized treatment and precision management in HCC

    Laparoscopic Transient Uterine Artery Occlusion and Myomectomy for Symptomatic Uterine Myoma as an Alternative to Hysterectomy

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    Objective: To compare the clinical outcomes of laparoscopic transient uterine artery ligation plus myomectomy (LTUAL) to simple laparoscopic myomectomy (LM) for symptomatic myomas

    Combining linear-scaling quantum transport and machine-learning molecular dynamics to study thermal and electronic transports in complex materials

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    We propose an efficient approach for simultaneous prediction of thermal and electronic transport properties in complex materials. Firstly, a highly efficient machine-learned neuroevolution potential is trained using reference data from quantum-mechanical density-functional theory calculations. This trained potential is then applied in large-scale molecular dynamics simulations, enabling the generation of realistic structures and accurate characterization of thermal transport properties. In addition, molecular dynamics simulations of atoms and linear-scaling quantum transport calculations of electrons are coupled to account for the electron-phonon scattering and other disorders that affect the charge carriers governing the electronic transport properties. We demonstrate the usefulness of this unified approach by studying thermoelectric transport properties of a graphene antidot lattice.Comment: 8 pages, 4 figure

    A minimal Tersoff potential for diamond silicon with improved descriptions of elastic and phonon transport properties

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    Silicon is an important material and many empirical interatomic potentials have been developed for atomistic simulations of it. Among them, the Tersoff potential and its variants are the most popular ones. However, all the existing Tersoff-like potentials fail to reproduce the experimentally measured thermal conductivity of diamond silicon. Here we propose a modified Tersoff potential and develop an efficient open source code called GPUGA (graphics processing units genetic algorithm) based on the genetic algorithm and use it to fit the potential parameters against energy, virial and force data from quantum density functional theory calculations. This potential, which is implemented in the efficient open source GPUMD (graphics processing units molecular dynamics) code, gives significantly improved descriptions of the thermal conductivity and phonon dispersion of diamond silicon as compared to previous Tersoff potentials and at the same time well reproduces the elastic constants. Furthermore, we find that quantum effects on the thermal conductivity of diamond silicon at room temperature are non-negligible but small: using classical statistics underestimates the thermal conductivity by about 10\% as compared to using quantum statistics.Comment: 9 pages, 6 figure

    Scalable Scheduling for Industrial Time-Sensitive Networking: A Hyper-flow Graph Based Scheme

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    Industrial Time-Sensitive Networking (TSN) provides deterministic mechanisms for real-time and reliable flow transmission. Increasing attention has been paid to efficient scheduling for time-sensitive flows with stringent requirements such as ultra-low latency and jitter. In TSN, the fine-grained traffic shaping protocol, cyclic queuing and forwarding (CQF), eliminates uncertain delay and frame loss by cyclic traffic forwarding and queuing. However, it inevitably causes high scheduling complexity. Moreover, complexity is quite sensitive to flow attributes and network scale. The problem stems in part from the lack of an attribute mining mechanism in existing frame-based scheduling. For time-critical industrial networks with large-scale complex flows, a so-called hyper-flow graph based scheduling scheme is proposed to improve the scheduling scalability in terms of schedulability, scheduling efficiency and latency & jitter. The hyper-flow graph is built by aggregating similar flow sets as hyper-flow nodes and designing a hierarchical scheduling framework. The flow attribute-sensitive scheduling information is embedded into the condensed maximal cliques, and reverse maps them precisely to congestion flow portions for re-scheduling. Its parallel scheduling reduces network scale induced complexity. Further, this scheme is designed in its entirety as a comprehensive scheduling algorithm GH^2. It improves the three criteria of scalability along a Pareto front. Extensive simulation studies demonstrate its superiority. Notably, GH^2 is verified its scheduling stability with a runtime of less than 100 ms for 1000 flows and near 1/430 of the SOTA FITS method for 2000 flows
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