Foraging activity by the southern brown bandicoot (Isoodon obesulus) as a mechanism for soil turnover

Mammals that forage for food by biopedturbation can alter the biotic and abiotic characteristics of their habitat, influencing ecosystem structure and function. Bandicoots, bilbies, bettongs and potoroos are the primary digging marsupials in Australia, although most of these species have declined throughout their range. This study used a snapshot approach to estimate the soil turnover capacity of the southern brown bandicoot (Isoodon obesulus, Shaw 1797), a persisting digging Australian marsupial, at Yalgorup National Park, Western Australia. The number of southern brown bandicoots was estimated using mark-recapture techniques. To provide an index of digging activity per animal, we quantified the number of new foraging pits and bandicoot nose pokes across 18 plots within the same area. The amount of soil displaced and physical structure of foraging pits were examined from moulds of 47 fresh foraging pits. We estimated that an individual southern brown bandicoot could create ∼45 foraging pits per day, displacing ∼10.74kg of soil, which extrapolates to ∼3.9 tonnes of soil each year. The digging activities of the southern brown bandicoots are likely to be a critical component of soil ecosystem processe

Do woodland birds prefer to forage in healthy Eucalyptus wandoo trees?

Globally, many forests and woodlands are in decline. The marked loss of canopy foliage typical of these declines results in reduced foraging resources (e.g. nectar, pollen, and insects) and, subsequently, can reduce habitat quality for woodland birds. In south-west Western Australia, patches of Eucalyptus wandoo woodlands have shown a decline in condition since at least 2002. We investigated how changes in E. wandoo condition affect the woodland bird community. Foraging activities of three bird species were recorded for 20 sites in Dryandra State Forest and Wandoo Conservation Park either by conducting watches on focal trees ('sitting' method), or following individuals through the woodland ('following' method). Condition assessments of trees used by the birds were compared with those for trees available at the study site. Weebills (Smicrornis brevirostris; canopy insectivore) displayed preference for healthy trees (low amounts of canopy dieback), whereas rufous treecreepers (Climacteris rufa; bark-foraging insectivore) preferred trees with a higher proportion of dead branches. Yellow-plumed honeyeaters (Lichenostomus ornatus; insectivore/nectarivore) foraged in older, larger E. wandoo trees having full canopies with few signs of tree decline. Tree declines, such as that happening in E. wandoo, alter the foraging resources and habitat available to woodland birds

Novel resources: opportunities for and risks to species conservation

During the Anthropocene, ongoing rapid environmental changes are exposing many species to novel resources. However, scientists’ understanding of what novel resources are and how they impact species is still rudimentary. Here, we used a resource‐based approach to explore novel resources. First, we conceptualized novel resource use by species along two dimensions of novelty: namely, ecosystem novelty and resource novelty. We then examined characteristics that influence a species’ response to a novel resource and how novel resources can affect individuals, populations, species, and communities. In addition, we discuss potential management complications associated with novel resource use by threatened species. As conservation and management embrace global environmental change, it is critical that ecologists improve the current understanding of the opportunities and risks that novel resources present to species conservation

Whole-genome sequencing reveals host factors underlying critical COVID-19

Critical COVID-19 is caused by immune-mediated inflammatory lung injury. Host genetic variation influences the development of illness requiring critical care1 or hospitalization2,3,4 after infection with SARS-CoV-2. The GenOMICC (Genetics of Mortality in Critical Care) study enables the comparison of genomes from individuals who are critically ill with those of population controls to find underlying disease mechanisms. Here we use whole-genome sequencing in 7,491 critically ill individuals compared with 48,400 controls to discover and replicate 23 independent variants that significantly predispose to critical COVID-19. We identify 16 new independent associations, including variants within genes that are involved in interferon signalling (IL10RB and PLSCR1), leucocyte differentiation (BCL11A) and blood-type antigen secretor status (FUT2). Using transcriptome-wide association and colocalization to infer the effect of gene expression on disease severity, we find evidence that implicates multiple genes—including reduced expression of a membrane flippase (ATP11A), and increased expression of a mucin (MUC1)—in critical disease. Mendelian randomization provides evidence in support of causal roles for myeloid cell adhesion molecules (SELE, ICAM5 and CD209) and the coagulation factor F8, all of which are potentially druggable targets. Our results are broadly consistent with a multi-component model of COVID-19 pathophysiology, in which at least two distinct mechanisms can predispose to life-threatening disease: failure to control viral replication; or an enhanced tendency towards pulmonary inflammation and intravascular coagulation. We show that comparison between cases of critical illness and population controls is highly efficient for the detection of therapeutically relevant mechanisms of disease

Effects of a short fire-return interval on resources and assemblage structure of birds in a tropical savanna

Fire frequency is a key land management issue, particularly in tropical savannas where fire is widely used and fire recurrence times are often short. We used an extended Before-After-Control-Impact design to examine the impacts of repeated wet-season burning for weed control on bird assemblages in a tropical savanna in north Queensland, Australia. Experimentally replicated fire treatments (unburnt, singularly bunt, twice burnt), in two habitats (riparian and adjacent open woodland), were surveyed over 3 years (1 year before the second burn, 1 year post the second burn, 2 years post the second burn) to examine responses of birds to a rapid recurrence of fire. Following the second burn, species richness and overall bird abundance were lower in the twice-burnt sites than either the unburnt or singularly burnt sites. Feeding group composition varied across year of survey, but within each year, feeding guilds grouped according to fire treatment. In particular, abundance of frugivores and insectivores was lower in twice-burnt sites, probably because of the decline of a native shrub that produces fleshy fruits, Carissa ovata. Although broader climatic variability may ultimately determine overall bird assemblages, our results show that a short fire-return interval will substantially influence bird responses at a local scale. Considering that fire is frequently used as a land management tool, our results emphasize the importance of determining appropriate fire-free intervals

Pines and the ecology of Carnaby’s Black-Cockatoos (Calyptorhynchus latirostris) in the Gnangara Sustainability Strategy study area

The objective of this report is to improve the scientific basis for the GSS by providing information on the role of pines on the ecology of Carnaby‘s Black-Cockatoos in GSS area. This report also addresses how this species might be affected by the removal of pine from the Gnangara, Pinjar, and Yanchep pine plantations. Part I provides background information on the ecology and conservation biology of Carnaby‘s Black-Cockatoos and their association with the Swan Coastal Plain and the pine plantations in the GSS. It also provides a brief statement of the key issues associated with the impact of pine removal on this species. Part II describes various aspects of the ecology of Carnaby‘s Black-Cockatoos in the GSS area based on field research in 2009 and previous studies. Part III examines how the removal of pine may affect Carnaby‘s Black-Cockatoos and potential responses, provides an initial risk assessment framework, evaluates pine removal as a possible controlled action under the Environmental and Biodiversity Conservation Act 1999, and addresses landscape management and restoration for Carnaby‘s Black-Cockatoos conservation

Guidelines for developing ecological burning regimes for the Gnangara Groundwater System

The purpose of this report was to review fire management operations on the major areas of Crown Land managed by DEC on the Gnangara groundwater system in relation to the impacts of such practices on groundwater recharge and biodiversity

Impact of fire on biodiversity of the Gnangara Groundwater System

This report provides the basis for development of ecological burning regimes on the Gnangara Groundwater System based on plant vital attributes and habitat requirements of fauna

Terrestrial mammals of the Gnangara Groundwater System, Western Australia: history, status, and the possible impacts of a drying climate

Over the last 30 years declining rainfall and increased aquifer abstraction have heavily impacted water availability and ecosystems on the Gnangara Groundwater System (GGS). The mammal fauna of the area is considered to have been rich, with up to 28 terrestrial and 5 volant native species recorded since European settlement. This study investigated previous and current distribution of mammals on the GGS, and assessed potential impacts of predicted rainfall and groundwater declines on mammals. A general survey was conducted at 40 sites, and targeted trapping was undertaken for Hydromys chrysogaster and Isoodon obesulus fusciventer at wetlands. Nine native and seven introduced terrestrial mammal species were recorded during the general survey and capture rates were very low (1.05%). The most commonly captured native species was Tarsipes rostratus. There is evidence that only 11 (9 recorded and 2 considered to be extant) of the 28 historically recorded terrestrial native mammals still persist in the area. The species predicted to be most susceptible to rainfall and groundwater level declines include H. chrysogaster, I. obesulus fusciventer, and T. rostratus. Management and recovery actions required to protect mammals under predicted climatic changes include identification and maintenance of refugia and ecological linkages, supplementation of lakes, development of ecologically appropriate fire regimes, and control of predators