49 research outputs found
Graded Decompositional Semantic Prediction
Compared to traditional approaches, decompositional semantic labeling (DSL) is compelling but introduces complexities for data collection, quality assessment, and modeling. To shed light on these issues and lower barriers to the adoption of DSL or related approaches I bring existing models and novel variations into a shared, familiar framework, facilitating empirical investigation
Inverted bulk-heterojunction solar cell with cross-linked hole-blocking layer
AbstractWe have developed a hole-blocking layer for bulk-heterojunction solar cells based on cross-linked polyethylenimine (PEI). We tested five different ether-based cross-linkers and found that all of them give comparable solar cell efficiencies. The initial idea that a cross-linked layer is more solvent resistant compared to a pristine PEI layer could not be confirmed. With and without cross-linking, the PEI layer sticks very well to the surface of the indium–tin–oxide electrode and cannot be removed by solvents used to process PEI or common organic semiconductors. The cross-linked PEI hole-blocking layer functions for multiple donor–acceptor blends. We found that using cross-linkers improves the reproducibility of the device fabrication process
Learning to Translate with Products of Novices: A Suite of Open-Ended Challenge Problems for Teaching MT
Machine translation (MT) draws from several different disciplines, making it a complex subject to teach. There are excellent pedagogical texts, but problems in MT and current algorithms for solving them are best learned by doing. As a centerpiece of our MT course, we devised a series of open-ended challenges for students in which the goal was to improve performance on carefully constrained instances of four key MT tasks: alignment, decoding, evaluation, and reranking. Students brought a diverse set of techniques to the problems, including some novel solutions which performed remarkably well. A surprising and exciting outcome was that student solutions or their combinations fared competitively on some tasks, demonstrating that even newcomers to the field can help improve the state-ofthe-art on hard NLP problems while simultaneously learning a great deal. The problems, baseline code, and results are freely available.
Lipoic acid plays a role in scleroderma: insights obtained from scleroderma dermal fibroblasts
Abstract
Introduction
Systemic sclerosis (SSc) is a connective tissue disease characterized by fibrosis of the skin and organs. Increase in oxidative stress and platelet-derived growth factor receptor (PDGFR) activation promote type I collagen (Col I) production, leading to fibrosis in SSc. Lipoic acid (LA) and its active metabolite dihydrolipoic acid (DHLA) are naturally occurring thiols that act as cofactors and antioxidants and are produced by lipoic acid synthetase (LIAS). Our goals in this study were to examine whether LA and LIAS were deficient in SSc patients and to determine the effect of DHLA on the phenotype of SSc dermal fibroblasts. N-acetylcysteine (NAC), a commonly used thiol antioxidant, was included as a comparison.
Methods
Dermal fibroblasts were isolated from healthy subjects and patients with diffuse cutaneous SSc. Matrix metalloproteinase (MMPs), tissue inhibitors of MMPs (TIMP), plasminogen activator inhibitor 1 (PAI-1) and LIAS were measured by enzyme-linked immunosorbent assay. The expression of Col I was measured by immunofluorescence, hydroxyproline assay and quantitative PCR. PDGFR phosphorylation and α-smooth muscle actin (αSMA) were measured by Western blotting. Student’s t-tests were performed for statistical analysis, and P-values less than 0.05 with two-tailed analysis were considered statistically significant.
Results
The expression of LA and LIAS in SSc dermal fibroblasts was lower than normal fibroblasts; however, LIAS was significantly higher in SSc plasma and appeared to be released from monocytes. DHLA lowered cellular oxidative stress and decreased PDGFR phosphorylation, Col I, PAI-1 and αSMA expression in SSc dermal fibroblasts. It also restored the activities of phosphatases that inactivated the PDGFR. SSc fibroblasts produced lower levels of MMP-1 and MMP-3, and DHLA increased them. In contrast, TIMP-1 levels were higher in SSc, but DHLA had a minimal effect. Both DHLA and NAC increased MMP-1 activity when SSc cells were stimulated with PDGF. In general, DHLA showed better efficacy than NAC in most cases.
Conclusions
DHLA acts not only as an antioxidant but also as an antifibrotic because it has the ability to reverse the profibrotic phenotype of SSc dermal fibroblasts. Our study suggests that thiol antioxidants, including NAC, LA, or DHLA, could be beneficial for patients with SSc.http://deepblue.lib.umich.edu/bitstream/2027.42/112060/1/13075_2014_Article_411.pd
Ability of T1 lipase to degrade amorphous P(3HB): structural and functional study
An enzyme with broad substrate specificity would be an asset for industrial application. T1 lipase apparently has the same active site residues as polyhydroxyalkanoates (PHA) depolymerase. Sequences of both enzymes were studied and compared, and a conserved lipase box pentapeptide region around the nucleophilic serine was detected. The alignment of 3-D structures for both enzymes showed their active site residues were well aligned with an RMSD value of 1.981 Å despite their sequence similarity of only 53.8%. Docking of T1 lipase with P(3HB) gave forth high binding energy of 5.4 kcal/mol, with the distance of 4.05 Å between serine hydroxyl (OH) group of TI lipase to the carbonyl carbon of the substrate, similar to the native PhaZ7 Pl . This suggests the possible ability of T1 lipase to bind P(3HB) in its active site. The ability of T1 lipase in degrading amorphous P(3HB) was investigated on 0.2% (w/v) P(3HB) plate. Halo zone was observed around the colony containing the enzyme which confirms that T1 lipase is indeed able to degrade amorphous P(3HB). Results obtained in this study highlight the fact that T1 lipase is a versatile hydrolase enzyme which does not only record triglyceride degradation activity but amorphous P(3HB) degradation activity as well
Influencing Steer Performance Through Maternal Nutrition
Cows were fed a 28% CP cube at one of two supplement levels, high (HN) or low (LN), while grazing dormant winter range during late gestation to determine the effects of maternal supplementation level on male progeny performance and carcass characteristics. Steer initial BW did not differ between treatments; however, year 1 steers from cows fed higher supplement levels had greater final BW, HCW, marbling scores, and carcass value compared with steers from cows receiving lower supplement levels. Year 2 HN steers had greater proportions grading USDA quality grade modest or greater when compared to steers from both treatments in year 1, but only differed numerically from LN steers from year 2. Steer performance and carcass characteristics were improved in year 1 when dam protein supplementation levelswere increased
Unsupervised Part of Speech Tagging Without a Lexicon
As digital data and computing power become less expensive and as the premium on human time climbs ever higher, research in natural language processing has turned toward unsupervised methods of solving some of its most fundamental tasks including part of speech (POS) tagging and dependency parsing
Semantic Proto-Role Labeling
The semantic function tags of Bonial, Stowe, and Palmer (2013) and the ordinal, multi-property annotations of Reisinger et al. (2015) draw inspiration from Ddowty's semantic proto-role theory. We approach proto-role labeling as a multi-label classification problem and establish strong results for the task by adapting a successful model of traditional semantic role labeling. We achieve a proto-role micro-averaged F1 of 81.7 using gold syntax and explore joint and conditional models of proto-roles and categorical roles. In comparing the effect of Bonial, Stowe, and Palmer's tags to PropBank ArgN-style role labels, we are surprised that neither annotations greatly improve proto-role prediction; however, we observe that ArgN models benefit much from observed syntax and from observed or modeled proto-roles while our models of the semantic function tags do not